Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0306 ATGGCAATTGGCAAAGCACATGCCAAACCCCTTTTACCGATCTCTGTGTTGTGTGTTCTGGAAGCTAAGTCTATTTATTGTCGCCATGGTCCTCATGGGTCAGAATTGATTGTTCACGAAAGTTTTCTTCTCTTCCTCTTTATTCTCATGCCGAATAGCTTATGTGGATTTGTTGAGGGGGAAATCATGGGGTTTTGGCAATCTAGAAGGATTTCTAAGGGAAAGTGTCAAAGATCTGATTGCAGCATGGGTTACATTTGTGATTTCTGTGGGCAACAAAGGTCGATTGTGTACTGCCGCTCCGATGCTGCAGCTTTGTGCTTGTCTTGTGACCGAAATGTTCACTCTGCCAATGCCTTGTCAAGGCGTCACTCGAGAACATTGTTATGTGATCGGTGCCATTCACAAGCAGCATTTGTTAGATGTCCTGAAGAGAATATTTCACTTTGTCAAAATTGTGACTATATGGGGCATAGCTCATCTGCCTCCATTTCATCTCGAAAGAGGCAACCAATCAATTGTTACTCAGGCTGCCCGACAGCTGCAGAGCTCTCATCTATCTGGTCATTTGTTTTAGATCTCACTTCTGGAAGTGACGCTTGTGAGCAAGAATTAGGATTGATGAGCATTGCCGAAAATAGTGCAGTAAATGCTTGGGGCCCTGATGATAAAGCTGGTCAAAATGTATCTGGTGTAGATGAAACCAATGAATTCTCAAGTGTGGATAAATCAATTTGGTATGGGTCCTCTTCAATGCCTCACATTATGGACCAACCCATTACTAGAGATGCAACTTCACCCAAGTTGCACTATCCTGGAACAAAAGGTCCTGAACTCGAAATTGAAGATGACCTCTACGAGACTTTGAATATGGATGAAGATAGTTTGAATATTGAAAACTATGAAGAACTATTTGGTGTATCTCTCAGTTATTCTGAAGAACTGCTAGAGAATGGTGGTATTGATAGTTTGTTCAGGTTGAAGAGCTTATCTGCCGCTAAATCTGGTTGCCCTGGTGCGGCTGCTGCAGAGGGGGCGTCAGGCGGTTTTGTTAATAATGTGATGCAGCCTGCAAGCAGTAATGCAGCATCGGCAGATTCCGTGATGAGTTCGAAGACTGAACCGGTTCTTTGTTATAACAATAAGCAAGAGCACTCCAGCCTATCATTTTCTGGCATGACTGGAGAGAGTAGTGCAGGAGAACATCCAGACTGTGGAGCTTCATCAATGCTCCTAATGGGAGAACCTCCATGGTGTTCTATGACCACTGAGAGTTCCTTCCAGTCATCTAATCGTAGCGATGCTGTATTGCGCTATAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTATGCCTCTCGCAAAGTTAGGGCCGATACTCGAAGACGTGTCAAGGGACGCTTTGTCAAAGCTGGAGAAGCTTATGACTATGATCCTTTGAGTCAAACCAGAAGCTACTGA 1470 43.81 MAIGKAHAKPLLPISVLCVLEAKSIYCRHGPHGSELIVHESFLLFLFILMPNSLCGFVEGEIMGFWQSRRISKGKCQRSDCSMGYICDFCGQQRSIVYCRSDAAALCLSCDRNVHSANALSRRHSRTLLCDRCHSQAAFVRCPEENISLCQNCDYMGHSSSASISSRKRQPINCYSGCPTAAELSSIWSFVLDLTSGSDACEQELGLMSIAENSAVNAWGPDDKAGQNVSGVDETNEFSSVDKSIWYGSSSMPHIMDQPITRDATSPKLHYPGTKGPELEIEDDLYETLNMDEDSLNIENYEELFGVSLSYSEELLENGGIDSLFRLKSLSAAKSGCPGAAAAEGASGGFVNNVMQPASSNAASADSVMSSKTEPVLCYNNKQEHSSLSFSGMTGESSAGEHPDCGASSMLLMGEPPWCSMTTESSFQSSNRSDAVLRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAGEAYDYDPLSQTRSY 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2780743 2785762 - CmPI595203_02g003060.1 Cmu02g0306 408355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0306 489 CDD Bbox1_BBX-like 86 129 IPR049808 -
Cmu02g0306 489 SMART bboxneu5 82 129 IPR000315 GO:0008270(InterPro)
Cmu02g0306 489 ProSiteProfiles CCT domain profile. 432 474 IPR010402 GO:0005515(InterPro)
Cmu02g0306 489 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 83 479 - -
Cmu02g0306 489 Pfam CCT motif 432 474 IPR010402 GO:0005515(InterPro)
Cmu02g0306 489 ProSiteProfiles Zinc finger B-box type profile. 125 172 IPR000315 GO:0008270(InterPro)
Cmu02g0306 489 ProSiteProfiles Zinc finger B-box type profile. 82 129 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0306 Cmu-Chr2:2780743 Cmu02g1085 Cmu-Chr2:21481918 2.30E-123 dispersed
Cmu11g1191 Cmu-Chr11:23124070 Cmu02g0306 Cmu-Chr2:2780743 2.50E-06 dispersed
Cmu02g0306 Cmu-Chr2:2780743 Cmu11g1240 Cmu-Chr11:24326424 1.60E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5685 PF06203 CCT 8.00E-16 CL0281 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0306 - - - 0.0