Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0315 ATGAAAGAAGGAGTGGGTTTCGTGAGTGTGGAACGAAGAGGTTGGATTCTGTTCTCCCTCGGTGACGATCATTGGGTTTCTCAAACGAAGTCTAGGGTTCCAGCGGATTCATCAGTGGAGAGGATTTATGATCAGAAAACCGATAGGCCATCTGAATCTTCATGGGGTCTGGAATTTCCCATTGCCATATCACAAATCTATGGCTCTGTTTCACTTTCATGCGCTCTGAAACTTCTTCTTCTGCTTCCAACTTTGATATTTCGAGTGTGTATTGCTGGTGTATCGGGCAAAATGATCAAAAATAAAAAAAGTTCACTGTTGCGCAAAATATTCCCATTGGAACTTCTTCCTTGCAGTACATTTTGTACACATGCAAGAGAAAAAGATCAGAAAATGGATGAGAAGAGAGAAACCAAAGAGCCATCAAGCTCTAATCTCTCATCTTCTGCTCATCAAATCAGGCCTACAGAGAAGAGGACACCAGTTGAAGTCTTTCAAGTGCCTGCAAGGTCTGGAGATGGCCATTCCAAGGGGGAGAGTGATGCGACTCATGAGCAGGATGAGGCAAAATCATCCCTCTCTTCCTTTCGTCCTGCTGCCAGCATGGAAGCATCCAGAAAGTGGATGGCATTTGAAAATGAAAACTTTAATATAACAGAAAGGTACACAAAGAACTTCAGTGGTAGCTTTGGGTCATATTCTACTGATCTCTTGGAAACAAACATAACAAAAAGGCCGGCAGAGGAGAACAAGATTGATCATTTATCATCACTGCAACTGACATATGTGATCTCAGATGCAACAAAACCAGATTGCCCCATCATGTTTGCCAGCAATAGGTTCTTGGTTATGACTGGCTATACACTGGAGGAGGTCATCGGAAGGAACTGCCGGTTTCTTCAAGGACCAGAAACAGATAAGAATGAAGTCGCCAAAATACGAGATGCAATTAGAAAGGGGAATAGTTACTGTGGCAAGCTCTTGAACTACAAGAAGAATGGTACTCCTTTCTGGAATCTTCTCACTGTTGGGCCTGTCAAAGATTCCCATGGCAACATCATCAAATTTATTGGAATGCAGGTTGAGATCGCCAAAAACACAGAAGGAAAAGAGAGAACCATGAAGTCCATGTCCATTACAGAGTTCCAAGCTGTGAAAAGTCTAAGATGTCACATTCAGTCAAAAAGGCATGATGCTGATACAAAGCACGAAGACCAAGAAATGACTGATGCTGATTATGCTCTGTACAAGGCTCTGGATATTGATGAGAATATTAGCACATCTGATAACCAAAAGGCTCGGTTCAAAGAAAGGACTCTAGGTTCTGCAGTAGAACGTGAAGAAAAGACAGTTGTTGAGGCATCTGTTTTCAATCCCAGGGATGGTGATTGTGTTGCTAAAAGAGAAAGGGACATATGTCAAGGAATTGAGTTGGCTACCACATTGGAACGGATTGAGAAGATATTTTTTATCACTAACCCAAGGCTTCCTGATAATCCTATTATATTCGCATCTCATAGGTTTCTTGATTCTACAGAATACTCATGTGAAGAAATTCTGGGGAGAAACTTTTGGTTTCTTCAGGGACCTGAAACAGATCAAGCAACTGTCTCAAAGATAAACAATGCAATTGAAGAGCAGAGAGAAATCACTCTTCAGATAATCAACTATACAAAGAGTGGAAAAAAGTTCTCGAATGTATTCCACTTGCAACCCATGTGGGATCAAAAGAAGGGGGAGCTTCAATATTTCATTGCGGCACAACTTCATCTAAAACCTTCAAGAGGCTGGCTTTTAGATCAAACGGAGCATGAAATTGCTAAGCTGGCCAAAGCTGTAGCTGAGAATGTTGACAAGGCTGTCCGTGAACTTCCTGATGCCAACTTGAAACCAAAGAACTTCTGGGCAATCTACTGTCAGCCAGTCTTGCCAAGGCCTCACAAGAAGTACATTCCTTCCTGGATAGCCATACAAAAGATTACCAGTCATGGTGAAAAGATTGGACTCCATCATTTTAAGCCAATAAGACCTCTGGGTTTTGGAGACATTGGCAGTGTTCATCTCGTACAACTAAACGGAACAGGTGAACTCTTTGCTATGAAGGCTATAGAAAAGTCAGTAATATTAAATCGAAACAAGGTTCATCGAGCATGCATGGAAAGGGAAATCATATCACTTCTGGATCATCCTTTCATGCCAACACTATACTCTTCATTTCAGACGCCTACGCACATTTTTCTTATTATGGACTTCTGCCCCGGTGGAGAGTTATTTACATTTCTTGACAAGCAGCCAATGAAAATGTTTAAAGAGGAAGCTGCTAGGTTCTATGCTGCAGAAGTTGTCATTGCTTTGGAGTATCTTCACTGTTTAGGTATTATCTACAGGGACCTAAAACCTGAAAATATTCTACTCCAGAAAGATGGACATATCATCCTCACTGATTTTGATTTATCGTTTAAGACGTCTAGCATACAAACCATAGAATCTTCAACCCCAAGAAAGAAGACATGTAGGCATAAATCACTGCCGATGGTCGTCGTTGAACCTATGGCAGAACTGAATTCATTCATTGGAACTGAAGAGTACATTGCCCCAGAGATCATAATGGGTGCAGGCCATGGTAGTTCTATTGACTGGTGGACTCTAGGTATCTTATTGTATGAAATGCTCTATGGTCGCACTCCCTTCAAAGGCAAAAACAGGAATAAAACTTTTGCCAATATTTTGTTCAAGGACTTGACCTTCCCCATTAGTATTCAGGCAAGTCTTGCAGCAAAACAACTGATTGATGCACTACTACAGAGAGACCCTGCACGTCGTCTAGGATCGAGGACCGGTGCTGATGAAATCAAACGACATCCATTTTTCCGTCAAATAAATTGGCCTAAAATTCGAACCATGACACCACCATCACCAGAAGTAGCCCTTCAAATAATTGAGAGAGATCCAAAAGCTAATGATTTGAAGTGGGAAGATGGAATGCTCAGTCTTTCAGAGTCGCGCGCGGGTGAGGATGTTAGTGGTGTCGGTGGTGGGTTGAAGGTAGAGGAGTCGCCACTGGTGGGGAAGCCGGAAGTGGAGTCGGTCAATTTTTTGCCGGAGTCTCGAATTTGA 3117 42.12 MKEGVGFVSVERRGWILFSLGDDHWVSQTKSRVPADSSVERIYDQKTDRPSESSWGLEFPIAISQIYGSVSLSCALKLLLLLPTLIFRVCIAGVSGKMIKNKKSSLLRKIFPLELLPCSTFCTHAREKDQKMDEKRETKEPSSSNLSSSAHQIRPTEKRTPVEVFQVPARSGDGHSKGESDATHEQDEAKSSLSSFRPAASMEASRKWMAFENENFNITERYTKNFSGSFGSYSTDLLETNITKRPAEENKIDHLSSLQLTYVISDATKPDCPIMFASNRFLVMTGYTLEEVIGRNCRFLQGPETDKNEVAKIRDAIRKGNSYCGKLLNYKKNGTPFWNLLTVGPVKDSHGNIIKFIGMQVEIAKNTEGKERTMKSMSITEFQAVKSLRCHIQSKRHDADTKHEDQEMTDADYALYKALDIDENISTSDNQKARFKERTLGSAVEREEKTVVEASVFNPRDGDCVAKRERDICQGIELATTLERIEKIFFITNPRLPDNPIIFASHRFLDSTEYSCEEILGRNFWFLQGPETDQATVSKINNAIEEQREITLQIINYTKSGKKFSNVFHLQPMWDQKKGELQYFIAAQLHLKPSRGWLLDQTEHEIAKLAKAVAENVDKAVRELPDANLKPKNFWAIYCQPVLPRPHKKYIPSWIAIQKITSHGEKIGLHHFKPIRPLGFGDIGSVHLVQLNGTGELFAMKAIEKSVILNRNKVHRACMEREIISLLDHPFMPTLYSSFQTPTHIFLIMDFCPGGELFTFLDKQPMKMFKEEAARFYAAEVVIALEYLHCLGIIYRDLKPENILLQKDGHIILTDFDLSFKTSSIQTIESSTPRKKTCRHKSLPMVVVEPMAELNSFIGTEEYIAPEIIMGAGHGSSIDWWTLGILLYEMLYGRTPFKGKNRNKTFANILFKDLTFPISIQASLAAKQLIDALLQRDPARRLGSRTGADEIKRHPFFRQINWPKIRTMTPPSPEVALQIIERDPKANDLKWEDGMLSLSESRAGEDVSGVGGGLKVEESPLVGKPEVESVNFLPESRI 1038
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2865665 2880427 + CmPI595203_02g003150.1 Cmu02g0315 408364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0315 1038 MobiDBLite consensus disorder prediction 127 197 - -
Cmu02g0315 1038 NCBIfam PAS domain S-box protein 500 585 IPR000014 -
Cmu02g0315 1038 NCBIfam PAS domain S-box protein 274 366 IPR000014 -
Cmu02g0315 1038 ProSiteProfiles Protein kinase domain profile. 672 957 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g0315 1038 Gene3D PAS domain 262 420 - -
Cmu02g0315 1038 Gene3D Transferase(Phosphotransferase) domain 1 756 971 - -
Cmu02g0315 1038 ProSiteProfiles PAC domain profile. 321 375 IPR000700 -
Cmu02g0315 1038 Pfam Protein kinase domain 675 957 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g0315 1038 SUPERFAMILY PYP-like sensor domain (PAS domain) 268 361 IPR035965 -
Cmu02g0315 1038 ProSitePatterns Serine/Threonine protein kinases active-site signature. 793 805 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu02g0315 1038 CDD STKc_phototropin_like 670 971 - -
Cmu02g0315 1038 ProSiteProfiles PAS repeat profile. 247 320 IPR000014 -
Cmu02g0315 1038 Gene3D Phosphorylase Kinase; domain 1 671 755 - -
Cmu02g0315 1038 FunFam Putative LOV domain-containing protein 756 969 - -
Cmu02g0315 1038 SMART pac_2 324 366 IPR001610 -
Cmu02g0315 1038 SMART pac_2 551 594 IPR001610 -
Cmu02g0315 1038 CDD PAS 488 583 IPR000014 -
Cmu02g0315 1038 Gene3D PAS domain 463 624 - -
Cmu02g0315 1038 SUPERFAMILY Protein kinase-like (PK-like) 649 984 IPR011009 -
Cmu02g0315 1038 SMART pas_2 249 318 IPR000014 -
Cmu02g0315 1038 SMART pas_2 476 545 IPR000014 -
Cmu02g0315 1038 MobiDBLite consensus disorder prediction 174 191 - -
Cmu02g0315 1038 CDD PAS 274 363 IPR000014 -
Cmu02g0315 1038 MobiDBLite consensus disorder prediction 127 141 - -
Cmu02g0315 1038 Pfam PAS domain 496 586 IPR000014 -
Cmu02g0315 1038 Pfam PAS domain 268 363 IPR000014 -
Cmu02g0315 1038 SMART serkin_6 672 957 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g0315 1038 PANTHER FLIPPASE KINASE 1-RELATED 626 973 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cmu02g0315 1038 SUPERFAMILY PYP-like sensor domain (PAS domain) 489 585 IPR035965 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0315 Cmu-Chr2:2865665 Cmu02g2063 Cmu-Chr2:34274415 1.60E-230 dispersed
Cmu05g0633 Cmu-Chr5:5417691 Cmu02g0315 Cmu-Chr2:2865665 9.70E-34 transposed
Cmu06g1710 Cmu-Chr6:28098377 Cmu02g0315 Cmu-Chr2:2865665 3.50E-56 transposed
Cmu01g2066 Cmu-Chr1:33628500 Cmu02g0315 Cmu-Chr2:2865665 2.10E-89 wgd
Cmu02g0315 Cmu-Chr2:2865665 Cmu02g1061 Cmu-Chr2:20577061 2.00E-273 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75280 PF00069 Pkinase 1.10E-62 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0315 K20715 - csv:101213364 1528.46