Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0327 ATGAGGATGGCAAGCTTCACGGTAGGTTGTTGGGCATTCGGTTCTTCGTGGGGTAGTGGTTGCTATCAAGCTAAACGTAGACGCTTTGTGCATATCAACAGTCGTTGTCTTTTGAATTTGGAGGGCTTCTTCAAGGCTTTATGTTCTTCTGAAATGGCTGCCTTTGTAGCTATAATAGTCTTCTATTTGGTTCTTCTGCAAACACCCACCAACATATTTGCGGTTAAGGATGAAGAAGAGTGGAAATCTGCTACTGCAACGTACTCCAAAGAAACAGATGGGTCAATTGTTACAGAAGGTGCTTGTGGTTATGGAGATCTGCATAAGATAAGCTATGGAAAATATAGCGCTGGACTGAGTAGCATGTTGTTCAATAGAGGGAGTACCTGTGGAGCTTGCTATGAGCTTAGATGTGTTGACCACATCTTGTGGTGCTTGCAAGGAAGCCCGACTGTCATTCTAACAGCCACCGACTTCTGTCCTCCAAATTACGGCTTCTCTTCCGATTATGGTGGTTGGTGTAATTTTCCCAAGGAACACTTTGAGATGTCAGAGGCAGCGTTTGCTGAAATAGCAGAGAAAAAAGCAGATATTGTGCCAGTTCAATATAGGAGGGTGAGGTGTGACAGAAGTGGTGGAATGAGATTCACAGTTAGTGGGAATTCTCGTTTCTTTCAAGTGCTGATTACAAATGTTGGAATGGATGGTGAATTAGTGGCAGTCAAAGTAAAAGGATCAAGAACAGGATGGATACCACTGGCAAGAAACTGGGGACAAAACTGGCAAAGCAATGTCAATCTTCATGGACAACCTCTCTCTTTTGAAGTTACCTCCAGCAGTGGAAGAGCACTTACTTCCTACAGTGTTGCACCTGGAAACTGGCAGTTTGGGCAGACATTTGAAGGGAAACAATTTTGA 918 43.68 MRMASFTVGCWAFGSSWGSGCYQAKRRRFVHINSRCLLNLEGFFKALCSSEMAAFVAIIVFYLVLLQTPTNIFAVKDEEEWKSATATYSKETDGSIVTEGACGYGDLHKISYGKYSAGLSSMLFNRGSTCGACYELRCVDHILWCLQGSPTVILTATDFCPPNYGFSSDYGGWCNFPKEHFEMSEAAFAEIAEKKADIVPVQYRRVRCDRSGGMRFTVSGNSRFFQVLITNVGMDGELVAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYSVAPGNWQFGQTFEGKQF 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3007828 3012350 - CmPI595203_02g003270.1 Cmu02g0327 408376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0327 305 Gene3D - 210 305 IPR036749 -
Cmu02g0327 305 Pfam Lytic transglycolase 117 203 IPR009009 -
Cmu02g0327 305 SUPERFAMILY PHL pollen allergen 210 302 IPR036749 -
Cmu02g0327 305 SMART dpbb_1 116 203 IPR007112 -
Cmu02g0327 305 CDD DPBB_EXPA_N 80 208 - -
Cmu02g0327 305 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 99 213 IPR007112 -
Cmu02g0327 305 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Cmu02g0327 305 Gene3D - 67 209 IPR036908 -
Cmu02g0327 305 PRINTS Expansin/Lol pI family signature 120 138 IPR007118 GO:0005576(InterPro)
Cmu02g0327 305 PRINTS Expansin/Lol pI family signature 196 212 IPR007118 GO:0005576(InterPro)
Cmu02g0327 305 PRINTS Expansin/Lol pI family signature 98 116 IPR007118 GO:0005576(InterPro)
Cmu02g0327 305 PRINTS Expansin/Lol pI family signature 80 95 IPR007118 GO:0005576(InterPro)
Cmu02g0327 305 PRINTS Expansin/Lol pI family signature 250 264 IPR007118 GO:0005576(InterPro)
Cmu02g0327 305 PRINTS Expansin/Lol pI family signature 288 302 IPR007118 GO:0005576(InterPro)
Cmu02g0327 305 PANTHER EXPANSIN-A15 56 305 IPR002963 GO:0009664(InterPro)
Cmu02g0327 305 PRINTS Expansin signature 259 280 IPR002963 GO:0009664(InterPro)
Cmu02g0327 305 PRINTS Expansin signature 171 188 IPR002963 GO:0009664(InterPro)
Cmu02g0327 305 PRINTS Expansin signature 138 149 IPR002963 GO:0009664(InterPro)
Cmu02g0327 305 PRINTS Expansin signature 188 201 IPR002963 GO:0009664(InterPro)
Cmu02g0327 305 PRINTS Expansin signature 111 125 IPR002963 GO:0009664(InterPro)
Cmu02g0327 305 PRINTS Expansin signature 212 224 IPR002963 GO:0009664(InterPro)
Cmu02g0327 305 PRINTS Expansin signature 152 162 IPR002963 GO:0009664(InterPro)
Cmu02g0327 305 PRINTS Expansin signature 288 304 IPR002963 GO:0009664(InterPro)
Cmu02g0327 305 PRINTS Expansin signature 224 245 IPR002963 GO:0009664(InterPro)
Cmu02g0327 305 SUPERFAMILY Barwin-like endoglucanases 80 231 IPR036908 -
Cmu02g0327 305 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 223 302 IPR007117 -
Cmu02g0327 305 Pfam Expansin C-terminal domain 214 291 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0327 Cmu-Chr2:3007828 Cmu02g2002 Cmu-Chr2:33783402 2.40E-73 dispersed
Cmu02g0327 Cmu-Chr2:3007828 Cmu03g0763 Cmu-Chr3:1825738 1.40E-73 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0327 - - - 0.0