Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0338 ATGGCCTCCATAGATAGGAATCGTGCCGCTGTAGGTAGATTCCAACGTTGTGGTTGGATAGAGTGCCCCCACTGCAGGAAGGAGCTTGTGCTGCTGTGGCCGCCGTCCAAGTGGTTGAAACGTAACTCAATCACCGCCGCCGCCGCAGTCAAAGTCTCCACCTTAGTGGCTGTCGAAGTTCCGATCACAGTCGAAGCCTCCACGAAAGTTAACTGTCGAAGTTCCGCCGCTGTCCAAGTGCGCCGCCGTCTGAAGCTCCAATCGTGGTCGCCGTCGCCGTCGCCGTCGCCGTTCGATGAAGTCTTAGGTCGCGCGCGAGAGGTCAACATTGCTTCAAGTGGAGCTGGCAAATCCTGTTTATGCCCCAAAGAGGGTGACCTTTGGGATTGGATATGGCATTATGAAGAAATTTCCCACTTGGTACTTGTTTGTATTCAAGGAATTTCAGAAGGGGCCTCAAGAAATGAAGTAGTGAAAGTTGGAGCTATATTTTCACTTAGTTCTGTCAATGGGAAAGTTTCCAAGATTGCCATTGAAGCTGCTGAGAAAGATGTGAATTCTGATCCAAGTGTTCTTGGAGGAAGAAAGCTATCTATTTCCATATATGATGCAAATTATAGTGGATTTCTTGGTATCACAGGAGCAATGAAGTACATGGTGTCTGACACAGTTGCCATCCTTGGTCCACAAGATTCTACAATGGCTCATACACTCTCACATCTTTCTAATGAACTCCATATCCCGTTACTCTCATTTACAGCATTGGACCCAACACTTTCAACTTTGCAATATCCATACTTCATTCAAACAGCTCCAAATGATCAATTTCAAATGACTGCAATTGCTGATATGATTCATTATTACGGTTGGCATGACGTCGTTGTGGTTTTCACCGACGACGATCAATGTCGAAACAGTATGATTGAATTAGGTGATAAACTTGAAGAGAGAAGCTTGAAAATTTCCTCTAAAGTGCCACTCCCCCCTTACCCAACAGCAACAAGAACTCAAGTTCAAGATGCATTGGTAAAGATCAAAATGATGGAATCTCGAGTAATCGTATTGTACACGTTTTCGAAAACCGGTTTCTTGGTTTTCGAAGTGGCTCAAAGCCTTAGAATGATGGGAGCTGGTTATGTTTGGATAACCTCTAGTTGGCTATCAACAGTAATAGATTCTACTTCACCACTTCCTTTGAAAATTGCCAACTCCATCCAAGGAGTTCTTACACTTCGTCTACACACGCCCGATTCGAAAATGAAACGATCTTTTATATCGAGATGGAACAAGCTGAGTAATGGCTCCTCAATTGGGTTGAATACGTATGGCCTATATGCTTATGATACTGTTTGGATGGTTGCAAGAGGAGTGAAAAAGTTATTGGATCAAAATGGAACTATCTCATTCTCCAAAGTTACAAATGCTGGTAATCTTAGTGGAGAGACTTTGGATTTTAGTTCATTGGGAATCTTTAATGAAGGAAATGATTTGCTTAACTATTTATTGAATATCAGTATGACTGGTTTAACAGGGCCTATTAAGTTTCTAGATAAATCCCCTTTACATCCTTCATATGATATCTTAAATGTAGTGAAATCTGGTATGAAGAGAATCGGATATTGGTCTAACTATTCCGGTTTGTCTGTCGTGGCGCCCGAAACGTTGTATGGCAAAGCAATTAATCGTTCTATGTTAACCGAACAGTTAAGCAGCACAATGTGGCCTGGGGGATTGACAACAAAGCCTCGTGGTTGGGTTCTACCGCTCGATGGAAGGCGGCTAAGAATCGGCGTTCCACGCAGAGTTAGTTATCAGGAATTCGTGACACCGGGAAATGGAAATGGTACAATCAAAGGATACTGCATTGATGTGTTCACTGCTGCTGTCAACTTGCTTCCATATGCAGTTACTTATGAGTTCATTTTGTTTGGAGATGGTGAGAAGAATCCTAGCTACCTTGAGCTTGTAAATAAAGTTGCTTTGAAAGAATTTGATGCTGCTGTTGGTGACATTGCTATTGTGACTAGTCGGACAAGGATCGTCGATTTTACGCAGCCTTATATCGACTCGGGGCTAGTAGTTCTGGCCCCTGCAAAGAAGTTGAATTCAAGTCCTTTGGCATTCCTTCGCCCATTCACACCAATGATGTGGGCTGTCACAGCAGCATTTTTCTTCCTCATTGGATTAGTTGTGTGGATGTTGGAACATCGGAAAAACGACGAATTTCGAGGGCATCCTAGGACACAAATTGTCACAATCCTCTGGTTTGGCTTCTCTACTATGTTTTTTGCACAAAGAGAAAACGTCGTGAGCACGCTCGGTCGTTTCGTGATAGTCGTGTGGCTTTTTGTGGTTCTAATTATCAACTCGAGCTACACCGCTAACCTGACATCGATATTCACAGTACAACTAGCCACCTCATCTATCACAGGAATCGATTCATTGATATCTAGCAATGTGCATATAGGATTCCAAGTTGGTTCATTTGCTGAAAGTTATTTAAGTGAGCAACTTAATGTCCAAAAGTCTAGGCTCATTGCTCTTGGATCCCCAGAAGAGTATGCTGCCGCTCTCAAGAACGGAACGGTCGGTGCTATTGTCGACGAGCAACCATACATCGACCTCTTTCTCACCGAGTATTGCGATTATTTGATAAGGGGCCAACAGTTCACCAAAAGTGGATGGGGATTTGCATTTCCACGAGACTCTCCATTGGCGGTAGACTTATCGACCGCCATACTCACACTCTCAGAGAACGGCCATCTTCAGAAGATTCACGACAAGTGGTTCTCAAGAAAATCTTGCAGTTCAGGAGATTCCGATCTAAATTCAGAGCAACTTCACTTGCAGAGCTTCATCGGATTGTTCTCCATTTGTGCCGGCGTGTGTTTGTTCGCTCTTTTGCTTCATTTTTTCTTGACCATGTGTCAATTCAACCGCCATTTGAAGCAAGATCCAGAAGCTTCGACCACCGGTACCGGTGGCGATGGCGGTGGCGGTGCCTGCCCTACGGCGCTGCGAAATTTCTTTTCGTTTGCAGATAAGAAGAAGGAAAGAAAGACGAGCTATTCGAAGAGGAAGGTCGAAGATACATTCTCGAGTGAACGTGGAGAGGATTAG 3120 43.97 MASIDRNRAAVGRFQRCGWIECPHCRKELVLLWPPSKWLKRNSITAAAAVKVSTLVAVEVPITVEASTKVNCRSSAAVQVRRRLKLQSWSPSPSPSPFDEVLGRAREVNIASSGAGKSCLCPKEGDLWDWIWHYEEISHLVLVCIQGISEGASRNEVVKVGAIFSLSSVNGKVSKIAIEAAEKDVNSDPSVLGGRKLSISIYDANYSGFLGITGAMKYMVSDTVAILGPQDSTMAHTLSHLSNELHIPLLSFTALDPTLSTLQYPYFIQTAPNDQFQMTAIADMIHYYGWHDVVVVFTDDDQCRNSMIELGDKLEERSLKISSKVPLPPYPTATRTQVQDALVKIKMMESRVIVLYTFSKTGFLVFEVAQSLRMMGAGYVWITSSWLSTVIDSTSPLPLKIANSIQGVLTLRLHTPDSKMKRSFISRWNKLSNGSSIGLNTYGLYAYDTVWMVARGVKKLLDQNGTISFSKVTNAGNLSGETLDFSSLGIFNEGNDLLNYLLNISMTGLTGPIKFLDKSPLHPSYDILNVVKSGMKRIGYWSNYSGLSVVAPETLYGKAINRSMLTEQLSSTMWPGGLTTKPRGWVLPLDGRRLRIGVPRRVSYQEFVTPGNGNGTIKGYCIDVFTAAVNLLPYAVTYEFILFGDGEKNPSYLELVNKVALKEFDAAVGDIAIVTSRTRIVDFTQPYIDSGLVVLAPAKKLNSSPLAFLRPFTPMMWAVTAAFFFLIGLVVWMLEHRKNDEFRGHPRTQIVTILWFGFSTMFFAQRENVVSTLGRFVIVVWLFVVLIINSSYTANLTSIFTVQLATSSITGIDSLISSNVHIGFQVGSFAESYLSEQLNVQKSRLIALGSPEEYAAALKNGTVGAIVDEQPYIDLFLTEYCDYLIRGQQFTKSGWGFAFPRDSPLAVDLSTAILTLSENGHLQKIHDKWFSRKSCSSGDSDLNSEQLHLQSFIGLFSICAGVCLFALLLHFFLTMCQFNRHLKQDPEASTTGTGGDGGGGACPTALRNFFSFADKKKERKTSYSKRKVEDTFSSERGED 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3098302 3109090 - CmPI595203_02g003380.1 Cmu02g0338 408387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0338 1039 CDD GluR_Plant 592 930 - -
Cmu02g0338 1039 Pfam Receptor family ligand binding region 175 532 IPR001828 -
Cmu02g0338 1039 Gene3D - 705 846 - -
Cmu02g0338 1039 Pfam Ligand-gated ion channel 932 962 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cmu02g0338 1039 Gene3D - 273 547 - -
Cmu02g0338 1039 Gene3D - 872 937 - -
Cmu02g0338 1039 Gene3D - 176 522 - -
Cmu02g0338 1039 MobiDBLite consensus disorder prediction 1016 1039 - -
Cmu02g0338 1039 Pfam Bacterial extracellular solute-binding proteins, family 3 604 715 IPR001638 -
Cmu02g0338 1039 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 158 1021 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cmu02g0338 1039 FunFam Glutamate receptor 589 705 - -
Cmu02g0338 1039 Gene3D - 588 704 - -
Cmu02g0338 1039 SUPERFAMILY Periplasmic binding protein-like II 570 932 - -
Cmu02g0338 1039 SUPERFAMILY Periplasmic binding protein-like I 152 585 IPR028082 -
Cmu02g0338 1039 FunFam Glutamate receptor 273 431 - -
Cmu02g0338 1039 FunFam Glutamate receptor 831 934 - -
Cmu02g0338 1039 FunFam Glutamate receptor 705 835 - -
Cmu02g0338 1039 SMART GluR_14 595 932 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cmu02g0338 1039 PIRSF IGluLR_plant 133 1034 IPR017103 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0338 Cmu-Chr2:3098302 Cmu02g0873 Cmu-Chr2:10849604 7.40E-252 dispersed
Cmu01g2040 Cmu-Chr1:33453311 Cmu02g0338 Cmu-Chr2:3098302 1.00E-281 wgd
Cmu11g1873 Cmu-Chr11:30832073 Cmu02g0338 Cmu-Chr2:3098302 9.50E-276 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0338 K05387 - csv:101208602 1560.81