Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0350 ATGAATGCACATATCAACTCCGTCTCCATTGCCAGTAGTAGCAGCTCTCCTCTCGATCTCGCCATTCCTTTTGAACTTCAAATGATTGAAACTACAACGTCTCTCGACTCCAATCGCCGCCGTCCTCGCAAGAAACGGTCAAGAATAGAAAAAGACTCCACCGTCACCACTGCCGCCGTCTCTTCCAAGGCTAAGTATAGCAAGAAACCCGATCCTAATGCACCCAAGATTACTCCTCCATGTACTGAGTGTGGGAAAAGATTTTGGTCAGATAAAGCGCTTTTCGGTCACATGAGGTGTCATCCTGAACGTCAATGGCGGGGAATTAATCCGCCTCTTAATTTCCGTCGTTCGATTTCTGTTTCTCCTTTTAGCCCTAATATCGCTACTGATTTAGAAGACTCTTCGTTTACTGAAGAAGATCAAGACATTGCTAATTGCTTGCTAATGCTTGCGAATAGCCCTAATTCGATTTCTAGGGTTTCCGATTGTCGATTCGAATGCTCGAGTTGTAAGAAAGTGTTTGGATCGCATCAAGCGCTTGGTGGACATAGGGCAAGTCATAAGAATGTGAGAGGCTGTTTCGCTATCGCAAAGAGCGATGAAGAAACAGAAGATGAAATTACTCTGTTTGGCCATGACAGGAGTATCAATCTGGAGAATAGAATGTCGATGATGATTTTAGGAACAGCAGAGCATAAATGTAGTGGCCACAAGAGATTCCATTGGGAGAATAATGCAGCTGCAGAAGAAGGTTTTGTTAATTTGGACTTGAACATGCCTGCTCCTCTTGAAGATGGTTCATCTTCTTCATATTCTTCAAGCCTCACTCTGGATCTCAGGTTGGGCCTTTGA 855 44.09 MNAHINSVSIASSSSSPLDLAIPFELQMIETTTSLDSNRRRPRKKRSRIEKDSTVTTAAVSSKAKYSKKPDPNAPKITPPCTECGKRFWSDKALFGHMRCHPERQWRGINPPLNFRRSISVSPFSPNIATDLEDSSFTEEDQDIANCLLMLANSPNSISRVSDCRFECSSCKKVFGSHQALGGHRASHKNVRGCFAIAKSDEETEDEITLFGHDRSINLENRMSMMILGTAEHKCSGHKRFHWENNAAAEEGFVNLDLNMPAPLEDGSSSSYSSSLTLDLRLGL 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3230757 3231611 - CmPI595203_02g003500.1 Cmu02g0350 408399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0350 284 MobiDBLite consensus disorder prediction 34 74 - -
Cmu02g0350 284 SUPERFAMILY beta-beta-alpha zinc fingers 80 188 IPR036236 -
Cmu02g0350 284 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 33 282 - -
Cmu02g0350 284 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Cmu02g0350 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 193 IPR013087 -
Cmu02g0350 284 Gene3D Classic Zinc Finger 39 193 - -
Cmu02g0350 284 ProSitePatterns Zinc finger C2H2 type domain signature. 168 188 IPR013087 -
Cmu02g0350 284 SMART c2h2final6 166 188 IPR013087 -
Cmu02g0350 284 SMART c2h2final6 79 101 IPR013087 -
Cmu02g0350 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 106 IPR013087 -
Cmu02g0350 284 Pfam C2H2-type zinc finger 165 189 IPR013087 -
Cmu02g0350 284 Pfam C2H2-type zinc finger 81 103 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0350 Cmu-Chr2:3230757 Cmu05g0027 Cmu-Chr5:380033 1.50E-13 dispersed
Cmu02g0996 Cmu-Chr2:15483698 Cmu02g0350 Cmu-Chr2:3230757 8.70E-25 transposed
Cmu10g1209 Cmu-Chr10:4864682 Cmu02g0350 Cmu-Chr2:3230757 3.30E-09 transposed
Cmu01g2032 Cmu-Chr1:33405453 Cmu02g0350 Cmu-Chr2:3230757 5.90E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5688 PF13912 zf-C2H2_6 6.90E-10 CL0361 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0350 - - - 0.0