Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0351 ATGTTGTGGAGTTTGATCCTGCAATTTTTCCATACTTTTTCTTCTCGCTTTTTAATCTGCTGTTTTCGTTATCGTTTCGGGGTTTTCGATGTTTCTTCTGGGATAGGCGAGCACCGGGTTGATGGCGTTGGTGAAGAAGGAGGAGTTAGTGTTACAGTTAACATTCGATGTTCTAATGGGTCGAAATTTTCGGTGACGACGAGTCTAGATTCCACGGTTGGGACATTCAAATCAATTCTTGCTCAGAATTGTGATATTCCAGCTGATCAACAGCGCTTGATCTACAAGGGTCGCATCTTAAAGGACGATCAGACCTTAGTTAGTTATGGTTTACAGGCAGATCACACGATTCACATGGTTCGTGGTTTTGCCCAAGCTTCATCAACACCTCCTGCGCCTGCTTCTAATGTTAATAGTAGAAGTTCTGACACTGCTCCTGGTGTCACAAGAGGTGTTGGTTCTAATGAGAGTGGTGCTTTTGGAAATGCTGGCCTTGGTGCATCATTATTTCCTGGATTGGGTTTCAATCCTCTCGGTGGGGTTGGAGCTGGACTTCCTGAGTTTGAGCAAGTGCAACAACAGTTGACTCAGAATCCAAACATGATGAGGGAAATAATGAACATGCCTGCAATTCAGAATTTGATGAATAACCCTGACTTGATGCGAACCTTAATTATGAGCAATCCTCAGATGCGGGATATTATTGACAGGAACCCAGAGCTTGCTCATATACTCAATGACCCTGGAATCCTTCGACAGACATTAGAGGCTGCAAGGAATCCTGAACTCATGAGAGAGATGATGAGAAACACTGACAGAGCAATGAGTAACATCGAATCTTCTCCAGAGGGATTTAACATGCTGAGGCGGATGTATGAAAATGTTCAGGAGCCATTTCTAAATGCAACAACAATGGCTGGAAATGCTGGAAATGATTTGAGTTCAAACCCATTTGCTGCTCTCTTGGCAAACCAAGGGGGCGCACAAGCGAGGAATGAGTCCAATAATTCTTCAACTACAGGATCAGAAACAACAGGAACTGCTGCTCCGAATACAAATCCACTTCCTAATCCGTGGGGTAATAGTGCTAGTGGAGGAACTCAGACCACAACCACACAGCCTACTCCAGCAGGTGATGCAAGGGCTCCTGGTATTGGGGCTTTAGGAGGGGCTGGTCGTACAAATGTGGATCGATTTGCTGGTGCTGTGCCAGACCCGGCTCAGCTGAACCAGTTTCTGCAAAACCCAGCTATTTCACAGATGATGCAGAGCCTACTCTCCAACCCTCAGTATATGAATCAAATCCTCAATCTCAACCCACAGCTACGAAGTATGGTTGATATGAATCCTCAATTAAGAGAGATGATGCAAAATCCAGAGTTTGTTCGCCAATTAACTAATCCTGAGATGATGCAGCAAATGCTATCGATCCAGCAGACCCTCCTCTCTACCTTAAATCGACAGCCATCATCTCAAGATTCTGCTCAAACAGGTGCTGCTGCAGGTGTTCCTAGCACTGCTGGATTGGAGATGTTAATGAACCTCTTTGGTGGGCTCGGTGCTGGTGGGTTGGCTGTTCCGAGCAATCCCAACGTGCCCCCAGAAGAACTATACGCAACTCAACTCTCGCAGCTCCAAGAGATGGGTTTCTTTGACACCCAAGAGAACATCAGAGCTCTACGTGCTACTTCCGGGAACGTTCATGCTGCTGTCGAGCGACTGCTGGGAAATCTCGAGCAGTAA 1743 46.07 MLWSLILQFFHTFSSRFLICCFRYRFGVFDVSSGIGEHRVDGVGEEGGVSVTVNIRCSNGSKFSVTTSLDSTVGTFKSILAQNCDIPADQQRLIYKGRILKDDQTLVSYGLQADHTIHMVRGFAQASSTPPAPASNVNSRSSDTAPGVTRGVGSNESGAFGNAGLGASLFPGLGFNPLGGVGAGLPEFEQVQQQLTQNPNMMREIMNMPAIQNLMNNPDLMRTLIMSNPQMRDIIDRNPELAHILNDPGILRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNAGNDLSSNPFAALLANQGGAQARNESNNSSTTGSETTGTAAPNTNPLPNPWGNSASGGTQTTTTQPTPAGDARAPGIGALGGAGRTNVDRFAGAVPDPAQLNQFLQNPAISQMMQSLLSNPQYMNQILNLNPQLRSMVDMNPQLREMMQNPEFVRQLTNPEMMQQMLSIQQTLLSTLNRQPSSQDSAQTGAAAGVPSTAGLEMLMNLFGGLGAGGLAVPSNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLEQ 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3239498 3244799 + CmPI595203_02g003510.1 Cmu02g0351 408400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0351 580 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 533 577 IPR015940 -
Cmu02g0351 580 Gene3D - 520 579 - -
Cmu02g0351 580 SMART ubq_7 51 122 IPR000626 GO:0005515(InterPro)
Cmu02g0351 580 FunFam Ubiquitin domain-containing protein DSK2b 225 281 - -
Cmu02g0351 580 SUPERFAMILY Ubiquitin-like 50 137 IPR029071 -
Cmu02g0351 580 SUPERFAMILY UBA-like 534 576 IPR009060 GO:0005515(InterPro)
Cmu02g0351 580 Pfam UBA/TS-N domain 538 574 IPR015940 -
Cmu02g0351 580 CDD UBA_PLICs 538 576 - -
Cmu02g0351 580 ProSiteProfiles Ubiquitin domain profile. 51 120 IPR000626 GO:0005515(InterPro)
Cmu02g0351 580 MobiDBLite consensus disorder prediction 325 391 - -
Cmu02g0351 580 MobiDBLite consensus disorder prediction 125 151 - -
Cmu02g0351 580 MobiDBLite consensus disorder prediction 128 151 - -
Cmu02g0351 580 MobiDBLite consensus disorder prediction 325 377 - -
Cmu02g0351 580 Pfam Ubiquitin family 53 121 IPR000626 GO:0005515(InterPro)
Cmu02g0351 580 Gene3D - 49 134 - -
Cmu02g0351 580 SMART uba_6 538 576 IPR015940 -
Cmu02g0351 580 Gene3D - 223 281 - -
Cmu02g0351 580 SMART CBM 406 435 IPR006636 -
Cmu02g0351 580 SMART CBM 228 267 IPR006636 -
Cmu02g0351 580 SMART CBM 176 215 IPR006636 -
Cmu02g0351 580 SMART CBM 439 474 IPR006636 -
Cmu02g0351 580 CDD Ubl_Dsk2p_like 51 123 - -
Cmu02g0351 580 PANTHER UBIQUILIN 48 576 IPR015496 GO:0005829(PANTHER)|GO:0006511(PANTHER)|GO:0031593(PANTHER)
Cmu02g0351 580 FunFam Ubiquitin domain-containing protein DSK2b 521 579 - -
Cmu02g0351 580 FunFam Ubiquitin domain-containing protein DSK2b 48 135 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0351 K04523 - - csv:101210644 944.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0351 Cmu-Chr2:3239498 Cmu10g0877 Cmu-Chr10:853300 7.50E-161 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g281 . . . . . Bpe12g00148 . . Cmo19g00813 Cmo11g01783 . . . . Sed05g2177 Cpe04g00628 Cpe15g00637 Bhi05g01590 Tan02g0585 Cmetu01g0562 . . . . Cla02g00354 Cam02g0363 Cec02g0364 Cco02g0371 Clacu02g0354 Cmu02g0351 . Cone12ag1271 Cone8ag1325 . . . Csa07g00180 . . Blo04g00603 Blo13g00475 . Bda14g00644 . . Bma03g00635 . . . . . Cma19g00792 Car11g01410 Car19g00609 . . . . . . . . . . . . . . . . Lsi11g01279 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005812 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 0 1 1 0 1 1 1 1 2 1 3 39