Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0375 ATGCCTTTCTTCCTCCCTCTTCTCATCCTCTCACTCTTCTCTTCTGCCTCTGCTTGTGATCGTTGTGTTCATCAAGCCAAAGCCGCCTTCTACCAAGACGAGTCCGCCGGTTTATATAGAGGCGCCTGTGGCTATGGCGATCTTACATTGCAGCTCTCAAATGGCTACTTCTCTGCCATTATGCCTCCTCTTTACAAGTACGGCGCTGGGTGTGGCGCTTGTTTTCAAGTAAGATGCAAGAATGAGAAAATTTGTAGTAAAGAAGGGACGAAAATTATTGTCACAGATCGAAATGATAATACATATACAGGATTGGTTCTTAGTCAGAAGGCTTTTGGTGAAATGGCTGTGAGTGGAAAAGATGGATTGCTATTGAGTTATGGAGTTGTGGATGTTGAATTCAAAAGGATTCCTTGTGAATACAATAACAAAAACTTGTTGGTTAGAGTGGAAGAATGGAGTCAATATCCTAATTACTTAGCCATTAAATTGCTTAACCAAGGTGGCCAAACAGAAATAGTAGCGATCGATATAGCTCAGGTTGGTTACTCGAATTGGGATTATATGGGTAGAAATTATGGAGCTGTATGGGAGACTAAAAAACCATTACCGAAAGGACCATTGCAGTTGCGGTTCGTGGTGACTTCTGGATATGATGGAAAGTGGATTTGGGCAAAGTACGTACTTCCTGCTGACTGGAGACCTGGATTGATTTACGATACTGGAGTTCAAATCTCCGACATTGCTAAAGAAGGTTGTCCAACAGAACAATGTGGTGATGGACAATGGAAACGATAG 798 42.23 MPFFLPLLILSLFSSASACDRCVHQAKAAFYQDESAGLYRGACGYGDLTLQLSNGYFSAIMPPLYKYGAGCGACFQVRCKNEKICSKEGTKIIVTDRNDNTYTGLVLSQKAFGEMAVSGKDGLLLSYGVVDVEFKRIPCEYNNKNLLVRVEEWSQYPNYLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAKYVLPADWRPGLIYDTGVQISDIAKEGCPTEQCGDGQWKR 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3403443 3404690 - CmPI595203_02g003750.1 Cmu02g0375 408424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0375 265 Gene3D - 141 245 IPR036749 -
Cmu02g0375 265 Pfam Expansin C-terminal domain 150 230 IPR007117 -
Cmu02g0375 265 SUPERFAMILY PHL pollen allergen 144 240 IPR036749 -
Cmu02g0375 265 PANTHER EXPANSIN-B3 9 247 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Cmu02g0375 265 Pfam Lytic transglycolase 59 133 IPR009009 -
Cmu02g0375 265 Gene3D - 10 140 IPR036908 -
Cmu02g0375 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Cmu02g0375 265 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Cmu02g0375 265 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576(InterPro)
Cmu02g0375 265 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Cmu02g0375 265 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Cmu02g0375 265 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Cmu02g0375 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 241 IPR007117 -
Cmu02g0375 265 SUPERFAMILY Barwin-like endoglucanases 8 143 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0375 Cmu-Chr2:3403443 Cmu02g0379 Cmu-Chr2:3439085 4.90E-99 dispersed
Cmu02g0375 Cmu-Chr2:3403443 Cmu02g0376 Cmu-Chr2:3410588 3.90E-96 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0375 - - - 0.0