Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0377 ATGGCTTGGTTTCTCAGCTTTCTCTTTCTCTTTTTCATCTCTTCTGCTAATGCTTGTGATCGATGTGTTTTCCAATCTAAAGCTAGTCACCTTTATGAATCACCCACTACATATGGGGGAGCATGTGGCTATGGCAACTTGGCATTGCAGTTCTCCAATGGCTTCTTTGCAGCTGCTGTGCCTTCTCTTTATAAACAAGGAGCTGGTTGTGGGGCTTGCTATCAAGTAAGGTGCAAAAATAGAAGGCTTTGCAATACAGTAGGAACTAAGGTGGTATTGACAGATCAAAACAATGACAATGTAACAGACCTTGTTCTTAGTCCAAAGGCTTTCTTTACCATGGCTCTCAATGGTAAAGGTTCAGATCTTTTGAATCTTGGGGTGGTTGATGTTGAATATAAGAGGGTGGCATGTGAATATCCAAATAGAAATTTGTTGGTGAGAGTGGAAGAATCAAGTTACAACCCATTCAAGTTAGCAATTAAATATTTGTACCAAGGTGGTCAAACAGACATGGTTGCTGTTGATATAGCTCAAGTTGGAACCTCAGATTGGAGCCATATGAAGAGAAGTTACGGAGCTGTTTGGGAAACAGACAATGTACCTGAAGGTGCATTACAATTGAGAATGGTGGTAACTTCTGGCTACGACGGCAAATGGATTTGGGCAAAGTCCGTACTTCCTGCTAATTGGAGAGCTGGGGCGATTTACGATACTGGAGTCCAAATCAACGATGTTGCCAAAGAGAGTTGCCCTCCTTGGCAATGTGCTAATGCTTGTGATCGTTGTATTTTTCAATCTAAGGCCGCTCATTACTATGAGGATACACCTACTTCATATGGAGGTGCATGTGGGTATGAAAATTTGGCCTTGGAAATGTCTCGAGGCTATTTTGCAGCTGCTGTCCCTTCTCTCTACCGACAAGGAATGGGTTGTGGTGCCTGCTACCAGGTAAGATGCAAGAATGCAACATTGTGTAACGCAATGGGGACCAAAGTAGTTTTGACAGATCAAAATTCTAATAACAGAACAGATTTTGTTCTTAGTAAAAAAGCTTTTTCTGCAATGGCTTTAAAGGGCAAAGGTCAAGAACTTTTGAAAACTGGAATGGTTGATATTGAATACAAGAGGATACCTTGCGAATACAATAAAAATTTATTAATACAAGTAGTAGAATGGAGCCACAAACCATATTATTTGGCTATTAAATTCCTCTACCAAGGAGGTCAAACCGACATAACTGCGGTCAACATAGCAGCTCAGGATGGTTCTGGAGAGTGGCAATACATGAAAAGAAACTATGGAGCCATTTGGGATACAAATAAAGTGCCAGAAGGGGCAATTAAGTTAGTGGTGATTGTAGTTTCAGGGTACAAAAATGGGAGAGGGATCATGATGAGTTATGCACTTCCTAGTGATTGGAAAAATGGAGAAATTTATGATACTGGAATTCAAATCAAAGATATTGCTTCTGAAGCTTGCAATCCTTGGCAATGTGGTGACCAACCATGGAAATGA 1518 40.71 MAWFLSFLFLFFISSANACDRCVFQSKASHLYESPTTYGGACGYGNLALQFSNGFFAAAVPSLYKQGAGCGACYQVRCKNRRLCNTVGTKVVLTDQNNDNVTDLVLSPKAFFTMALNGKGSDLLNLGVVDVEYKRVACEYPNRNLLVRVEESSYNPFKLAIKYLYQGGQTDMVAVDIAQVGTSDWSHMKRSYGAVWETDNVPEGALQLRMVVTSGYDGKWIWAKSVLPANWRAGAIYDTGVQINDVAKESCPPWQCANACDRCIFQSKAAHYYEDTPTSYGGACGYENLALEMSRGYFAAAVPSLYRQGMGCGACYQVRCKNATLCNAMGTKVVLTDQNSNNRTDFVLSKKAFSAMALKGKGQELLKTGMVDIEYKRIPCEYNKNLLIQVVEWSHKPYYLAIKFLYQGGQTDITAVNIAAQDGSGEWQYMKRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMMSYALPSDWKNGEIYDTGIQIKDIASEACNPWQCGDQPWK 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3416829 3424447 - CmPI595203_02g003770.1 Cmu02g0377 408426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0377 505 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 398 482 IPR007117 -
Cmu02g0377 505 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 281 385 IPR007112 -
Cmu02g0377 505 SUPERFAMILY PHL pollen allergen 143 238 IPR036749 -
Cmu02g0377 505 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 239 IPR007117 -
Cmu02g0377 505 Gene3D - 14 139 IPR036908 -
Cmu02g0377 505 Gene3D - 250 381 IPR036908 -
Cmu02g0377 505 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
Cmu02g0377 505 SMART dpbb_1 57 133 IPR007112 -
Cmu02g0377 505 SMART dpbb_1 299 375 IPR007112 -
Cmu02g0377 505 PANTHER EXPANSIN-B3 8 245 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Cmu02g0377 505 Pfam Lytic transglycolase 58 133 IPR009009 -
Cmu02g0377 505 Pfam Lytic transglycolase 300 373 IPR009009 -
Cmu02g0377 505 SUPERFAMILY Barwin-like endoglucanases 11 142 IPR036908 -
Cmu02g0377 505 SUPERFAMILY Barwin-like endoglucanases 259 384 IPR036908 -
Cmu02g0377 505 CDD DPBB_EXLA_N 257 382 - -
Cmu02g0377 505 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576(InterPro)
Cmu02g0377 505 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576(InterPro)
Cmu02g0377 505 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576(InterPro)
Cmu02g0377 505 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576(InterPro)
Cmu02g0377 505 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576(InterPro)
Cmu02g0377 505 Gene3D - 140 244 IPR036749 -
Cmu02g0377 505 Gene3D - 382 487 IPR036749 -
Cmu02g0377 505 SUPERFAMILY PHL pollen allergen 391 481 IPR036749 -
Cmu02g0377 505 CDD DPBB_EXLA_N 16 140 - -
Cmu02g0377 505 Pfam Expansin C-terminal domain 395 457 IPR007117 -
Cmu02g0377 505 Pfam Expansin C-terminal domain 147 228 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0377 Cmu-Chr2:3416829 Cmu02g0379 Cmu-Chr2:3439085 2.70E-106 dispersed
Cmu02g0376 Cmu-Chr2:3410588 Cmu02g0377 Cmu-Chr2:3416829 5.30E-138 tandem
Cmu02g0377 Cmu-Chr2:3416829 Cmu02g0378 Cmu-Chr2:3429214 3.80E-108 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0377 - - - 0.0