Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0378 ATGTATTATTGGTTCCTCACCTTCCTCTTCTTGCTCGTCTCCTCTACTACGGCTTCTTTTCCTCCTTGTAATCGTTGTGTTCGTCAATCCAAAGCTGCTCATTACTATCAAGATTCACCTACTTCATATGGAGGTGCTTGTGGTTATGCAAATTTAGCATTGCAAATCTCTCAAGGCTACTTTGCAGCTGCTGTCCCTTCCCTTTACAAGGGAGGAGCAGGTTGTGGCGCTTGCTACCAAGTAAGATGCAAAGACAAACATCTATGCAATACTGCAGGGACTAAAATAGTTTTGACAGATCAAAATAATGATAATAGAACAGATATTGTTCTTAGTAAGAAAGCTTTCTCTGCAATGGCTTTAAGAGGAAAAGCTCAACAACTTTTGAATACTGGACTCGTCGATGTAGAATACAAAAGGATACCTTGTGAATACAAAAATAAAAATCTATTGGTACAAGTGGTAGAATGGAGCCACAAACCATACTATTTGGCAATCAAATTCCTATATCAAGGAGGTCAAACAGACATACAAGCGGTTAACATAGCTCAGGTGGGTTTACCAAAATGGCGCCCTATGAAAAGAAATTATGGACCTATTTGGGATATTAATAGTGTGCCTGAAGGAGGATTACAATTGAGAATGGTAGTAAGTTCAAGATATGATAATGGAAAATGGATTTGGGCAGGTTTTGTGATCCCAGCTGATTGGAAAAATGGTGAAATTTATGATACTGGAGTTCAAATTAATGATATTGCTTTTGAATATTGCCCTCCTTGGCAATGTGATGATGGACAATGGAAATAA 807 38.17 MYYWFLTFLFLLVSSTTASFPPCNRCVRQSKAAHYYQDSPTSYGGACGYANLALQISQGYFAAAVPSLYKGGAGCGACYQVRCKDKHLCNTAGTKIVLTDQNNDNRTDIVLSKKAFSAMALRGKAQQLLNTGLVDVEYKRIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAQVGLPKWRPMKRNYGPIWDINSVPEGGLQLRMVVSSRYDNGKWIWAGFVIPADWKNGEIYDTGVQINDIAFEYCPPWQCDDGQWK 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3429214 3430690 - CmPI595203_02g003780.1 Cmu02g0378 408427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0378 268 Gene3D - 145 250 IPR036749 -
Cmu02g0378 268 SUPERFAMILY PHL pollen allergen 155 244 IPR036749 -
Cmu02g0378 268 CDD DPBB_EXLA_N 23 145 - -
Cmu02g0378 268 Pfam Lytic transglycolase 63 138 IPR009009 -
Cmu02g0378 268 PANTHER EXPANSIN-B3 8 251 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Cmu02g0378 268 SUPERFAMILY Barwin-like endoglucanases 18 147 IPR036908 -
Cmu02g0378 268 Pfam Expansin C-terminal domain 159 234 IPR007117 -
Cmu02g0378 268 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576(InterPro)
Cmu02g0378 268 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576(InterPro)
Cmu02g0378 268 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576(InterPro)
Cmu02g0378 268 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576(InterPro)
Cmu02g0378 268 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576(InterPro)
Cmu02g0378 268 Gene3D - 15 144 IPR036908 -
Cmu02g0378 268 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 245 IPR007117 -
Cmu02g0378 268 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 148 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0378 Cmu-Chr2:3429214 Cmu02g0381 Cmu-Chr2:3447983 5.10E-96 dispersed
Cmu02g0377 Cmu-Chr2:3416829 Cmu02g0378 Cmu-Chr2:3429214 3.80E-108 tandem
Cmu02g0378 Cmu-Chr2:3429214 Cmu02g0379 Cmu-Chr2:3439085 1.00E-104 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0378 - - - 0.0