Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0379 ATGGCTTGGTTCCTTATCTTATTCTTCGTCTTCCTCATCTCTTCTGCTACTGCTTGCGATCGTTGTATTCACCAATCCAAAGCTACTCATTATTATGGAGATTCACCTACTTCATATGGAGGAGCATGTGGGTATGGAGACTTGGCATTGGAATTTACCAATGGCTACTTTTCAGCTGCTGTGCCTTCTCTCTACAAACAAGGAGCTGGTTGTGGTGCGTGTTTTCAGGTAAGATGTAAAGACAAAAGACTATGCAATACAGCAGGGACCAAAGTAGTGTTGTCAGATCAAAATTATGATACAAGAGCAGATTTTGTTCTAAGTAGAAAGGCTTTTTCAGCCATGGCTTTGAAAGGAAAAGATCAACAACTTTTGAATACTGGGATTGTTGATGTAGAATACAAGAGGATACCTTGTGGATACAAAAACAAAAATTTGGCCGTACGAGTTGAAGAATCAAGTTATAATCCAAATTATTTAGCCATTAAACTTTTGTACCAAGGTGGCCAAACAGAGATAGTGGCTGTCGAGATAGCCGAGGTTGGTTCATACGAATGGGTGAGCTTAAGGAGAAACTATGGAGCAGTTTGGGATACAAATAAAGTACCCAAAGGAGCATTACAAATGAGAATGGCATTTACTTCAGGATACGATGGAAAATGGGTTTGGGCAGAATATGTTCTTCCTGTTGATTGGAAAATTGGAGCCATTTACGATACTGGAGTTCAGATTTATGATATTGCTAAAGAGGGTTGCCTTGCATCACAGTGTGGTGATAAACCATGGAAATAA 792 39.52 MAWFLILFFVFLISSATACDRCIHQSKATHYYGDSPTSYGGACGYGDLALEFTNGYFSAAVPSLYKQGAGCGACFQVRCKDKRLCNTAGTKVVLSDQNYDTRADFVLSRKAFSAMALKGKDQQLLNTGIVDVEYKRIPCGYKNKNLAVRVEESSYNPNYLAIKLLYQGGQTEIVAVEIAEVGSYEWVSLRRNYGAVWDTNKVPKGALQMRMAFTSGYDGKWVWAEYVLPVDWKIGAIYDTGVQIYDIAKEGCLASQCGDKPWK 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3439085 3441843 - CmPI595203_02g003790.1 Cmu02g0379 408428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0379 263 Pfam Expansin C-terminal domain 147 229 IPR007117 -
Cmu02g0379 263 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Cmu02g0379 263 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Cmu02g0379 263 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576(InterPro)
Cmu02g0379 263 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Cmu02g0379 263 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Cmu02g0379 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 240 IPR007117 -
Cmu02g0379 263 Gene3D - 141 245 IPR036749 -
Cmu02g0379 263 Gene3D - 12 139 IPR036908 -
Cmu02g0379 263 Pfam Lytic transglycolase 59 134 IPR009009 -
Cmu02g0379 263 PRINTS Major pollen allergen Lol pI signature 165 180 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cmu02g0379 263 PRINTS Major pollen allergen Lol pI signature 149 164 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cmu02g0379 263 PRINTS Major pollen allergen Lol pI signature 216 233 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cmu02g0379 263 PRINTS Major pollen allergen Lol pI signature 116 131 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cmu02g0379 263 SUPERFAMILY PHL pollen allergen 144 239 IPR036749 -
Cmu02g0379 263 CDD DPBB_EXLA_N 14 141 - -
Cmu02g0379 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Cmu02g0379 263 PANTHER EXPANSIN-B3 7 246 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Cmu02g0379 263 SUPERFAMILY Barwin-like endoglucanases 8 143 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0375 Cmu-Chr2:3403443 Cmu02g0379 Cmu-Chr2:3439085 4.90E-99 dispersed
Cmu02g0376 Cmu-Chr2:3410588 Cmu02g0379 Cmu-Chr2:3439085 2.50E-111 dispersed
Cmu02g0377 Cmu-Chr2:3416829 Cmu02g0379 Cmu-Chr2:3439085 2.70E-106 dispersed
Cmu02g0379 Cmu-Chr2:3439085 Cmu02g0381 Cmu-Chr2:3447983 3.50E-97 dispersed
Cmu02g0378 Cmu-Chr2:3429214 Cmu02g0379 Cmu-Chr2:3439085 1.00E-104 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0379 - - - 0.0