Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0382 ATGTGTCGAGATGGGGCATGTGGCTATGGTTCTTTGGCAAATGAATCTTTCCATGGATACATTGCTGGTGCGGTGCCTTTGCTATACAAACAAGGAGCTGGTTGTGGTGCTTGCTTTCAAGTGAGGTGCAAGAACAAGAAGCTGTGCAGTCCAATAGGAGCTAAAATAGTTTTGACAGATCAAAATTATGATAACCGAACTGATTTTGTTCTTAGTAGGAAAGCTTTCTCAGAAATGGCTCGATGGGGCAAGGCCCAAGATCTTTTGAAACTTGGAATGGTTGATATTGAATACAAGATGGTACCATGCGGATACAAAAACAAAAATTTGTTGGTGAGAATAGAAGAATGGAGCAACAAGCCTTACTACTTGGCCATGAAATTCCTTTACCAAGGTGGCCAGACAGAAATAAAAGCAATTGACATTGCTCAAGTTGGTTCTTCAGATTGGGAAGCTTTGAAGAGAAACTATGGAGCTATTTGGGATACAAGTAAAGTACCTGAAGGAGCATTGCAACTAAGAATTGTGGTAGCTTCAGGATATGATAATGAGAATTGGATTTGGACAAATTATGAAATTCCTGCTGATTGGAAAAATGGAGAAACTTATGATACAGGGATTCAAATTGAAGATATTGCCAAAGAATTTTGTTCCCCAAGAGAGTGTGGTGATAGAATATGGAAATGA 687 39.16 MCRDGACGYGSLANESFHGYIAGAVPLLYKQGAGCGACFQVRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKMVPCGYKNKNLLVRIEEWSNKPYYLAMKFLYQGGQTEIKAIDIAQVGSSDWEALKRNYGAIWDTSKVPEGALQLRIVVASGYDNENWIWTNYEIPADWKNGETYDTGIQIEDIAKEFCSPRECGDRIWK 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3455076 3458700 - CmPI595203_02g003820.1 Cmu02g0382 408431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0382 228 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576(InterPro)
Cmu02g0382 228 PRINTS Expansin/Lol pI family signature 150 164 IPR007118 GO:0005576(InterPro)
Cmu02g0382 228 PRINTS Expansin/Lol pI family signature 3 21 IPR007118 GO:0005576(InterPro)
Cmu02g0382 228 PRINTS Expansin/Lol pI family signature 91 107 IPR007118 GO:0005576(InterPro)
Cmu02g0382 228 PRINTS Expansin/Lol pI family signature 25 43 IPR007118 GO:0005576(InterPro)
Cmu02g0382 228 PANTHER EXPANSIN-B3 4 211 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Cmu02g0382 228 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 122 205 IPR007117 -
Cmu02g0382 228 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 4 108 IPR007112 -
Cmu02g0382 228 Gene3D - 1 103 IPR036908 -
Cmu02g0382 228 Gene3D - 105 209 IPR036749 -
Cmu02g0382 228 SUPERFAMILY PHL pollen allergen 108 204 IPR036749 -
Cmu02g0382 228 SUPERFAMILY Barwin-like endoglucanases 1 107 IPR036908 -
Cmu02g0382 228 Pfam Lytic transglycolase 27 98 IPR009009 -
Cmu02g0382 228 Pfam Expansin C-terminal domain 114 180 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0382 Cmu-Chr2:3455076 Cmu03g1839 Cmu-Chr3:24652465 5.20E-73 dispersed
Cmu02g0381 Cmu-Chr2:3447983 Cmu02g0382 Cmu-Chr2:3455076 4.60E-89 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0382 - - - 0.0