Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0442 ATGAGTGAAATCCCAAAAGTACCCTTGGCCGTTAGACTTCCGTCGCAAATCGCACGGCGAGTTGCTCCATTCCAAGGCAGAGAAGCGGAAGAGCCCTGGCCGTCAGATCTCGTCGGAAACCACCCGCCGTCGCTGAGAATCGGACGGTCAGCATCGAATAATGTGACCCCACAAAATCACAAATGGAAAAAGCGTCGTTTACGGATGACGGGGCGCTCTTCCCGTTTCCAAGCTTTTCGATTCACAAAAAGAAGAGATCGAGAAATGGCTGAAAGGGTTAGTGGGAAAGTGAAGTGGTTCAGTGACCAGAAAGGCTATGGCTTCATTTCTCCCAACGATGGAGGTGAAGATCTTTTCGTTCATCAGTCTTCCATCAGATCCGACGGTTTCCGAAGCCTCGGCGTTGGTGAGGATGTCGAGTTTCTGATCGAGGCTGAGTCCGATGGCCGTTCCAAGGCTGTTGATGTCACCGGCCCAGGAGAAGCTTCTGTGCAGGGAAGTCGCGGTGGTGGCGGCGGAGGTGGAGGAGGAGGTGGTTACTCCAGCGGAGGAGGAGGTGGGTATGGAGGAGGAGGCGGTGGTGGAAGGGGGAGACGTGGTGGTGGTGGATATGGGTTTAACGGTGGAAGTGGCGGCGGTGGCCGAGGTGGGTACGGCGGTGGTGGAGGTGGGTATGGTGGTGGGGGTTATGGAGGAGGTGGTGGGGGCGGTGGAGGTGGTGCTTGTTTCAAGTGTGGTGAGACTGGCCATATGGCGAGGGACTGCTACCAGAGTGGATCTCAAGGCGGTGGAGATAGGTACGGCGGAGGCGGAGGCGGCGGTGGCGGTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCTAGGGAGTGTCCAAGCAGTGGTCGTTGA 894 56.94 MSEIPKVPLAVRLPSQIARRVAPFQGREAEEPWPSDLVGNHPPSLRIGRSASNNVTPQNHKWKKRRLRMTGRSSRFQAFRFTKRRDREMAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGPGEASVQGSRGGGGGGGGGGGYSSGGGGGYGGGGGGGRGRRGGGGYGFNGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGGGGNCYSCGESGHFARECPSSGR 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4052565 4053590 - CmPI595203_02g004420.1 Cmu02g0442 408491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0442 297 Pfam 'Cold-shock' DNA-binding domain 94 158 IPR002059 GO:0003676(InterPro)
Cmu02g0442 297 PRINTS Cold shock protein signature 131 149 IPR002059 GO:0003676(InterPro)
Cmu02g0442 297 PRINTS Cold shock protein signature 95 110 IPR002059 GO:0003676(InterPro)
Cmu02g0442 297 PRINTS Cold shock protein signature 116 125 IPR002059 GO:0003676(InterPro)
Cmu02g0442 297 SUPERFAMILY Retrovirus zinc finger-like domains 232 295 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cmu02g0442 297 CDD CSP_CDS 93 158 IPR002059 GO:0003676(InterPro)
Cmu02g0442 297 Gene3D - 85 169 IPR012340 -
Cmu02g0442 297 SUPERFAMILY Nucleic acid-binding proteins 89 158 IPR012340 -
Cmu02g0442 297 ProSiteProfiles Zinc finger CCHC-type profile. 242 255 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cmu02g0442 297 SMART csp_8 94 159 IPR011129 GO:0003676(InterPro)
Cmu02g0442 297 PANTHER COLD SHOCK DOMAIN PROTEIN 2 206 294 - -
Cmu02g0442 297 MobiDBLite consensus disorder prediction 25 59 - -
Cmu02g0442 297 MobiDBLite consensus disorder prediction 150 178 - -
Cmu02g0442 297 ProSiteProfiles Zinc finger CCHC-type profile. 279 294 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cmu02g0442 297 Gene3D - 274 297 - -
Cmu02g0442 297 Gene3D - 237 266 - -
Cmu02g0442 297 ProSiteProfiles Cold-shock (CSD) domain profile. 92 158 IPR002059 GO:0003676(InterPro)
Cmu02g0442 297 ProSitePatterns Cold-shock (CSD) domain signature. 106 125 IPR019844 -
Cmu02g0442 297 SMART c2hcfinal6 278 294 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cmu02g0442 297 SMART c2hcfinal6 241 257 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cmu02g0442 297 Pfam Zinc knuckle 241 255 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cmu02g0442 297 Pfam Zinc knuckle 278 294 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0442 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0442 Cmu-Chr2:4052565 Cmu03g1539 Cmu-Chr3:12796978 1.20E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g135 . . . . . Bpe12g00116 . . Cmo19g00739 . . . . . Sed01g3135 . Cpe15g00585 Bhi05g01731 Tan02g0700 Cmetu01g0199 . Hepe02g0435 . . Cla02g00437 Cam02g0446 Cec02g0444 Cco02g0462 Clacu02g0448 Cmu02g0442 Cre02g0776 Cone12ag1224 Cone8ag1275 . . . . . Cme01g01275 Blo04g00561 Blo13g00516 Bda15g01039 Bda14g00610 Bpe15g00819 . Bma03g00602 . . . . . Cma19g00731 . Car19g00560 . . . . . . . . . . . . . . . . Lsi11g01191 . Chy01g00689 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001587 3 2 3 3 4 2 3 2 2 2 2 2 2 2 2 3 2 4 4 2 2 2 2 0 1 3 2 3 2 2 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5694 PF00313 CSD 2.70E-24 CL0021 Cmu TF