Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0448 ATGACGATTTCGGAGAATACGAAGGGTCTGGTTCTTGCTATGGCGTCCAGTGTGTTTATTGGGTCAAGTTTTATCTTGAAGAAGAAAGGACTTAAGCGTGCCGGAGCTACAGGGGCCAGAGCAGGTGTTGGTGGTTACACATACTTGTTAGAGCCACTTTGGTGGGCAGGCATGGTCACAATGATTATTGGAGAGATTGCAAACTTTGTAGCATATATTTATGCCCCAGCAGTTTTAGTCACACCCCTTGGTGCACTGAGCATTATTGTCAGTGCTGTTTTAGCCCATTTCTTATTGAAGGAGAGGCTACAGAAAATGGGTGTTGTAGGGTGTTTATCTTGTATTGTAGGATCAGTTATAATAGTTATCCATGCACCTCAGGAACATACTCCTGATTCTGTTGAAGAGATTTGGGATTTAGCAACTCAACCAGCTTTTCTAGTCTACATTGCTGCTATAGCTTCATTAGTGTTGGCTCTCATGTTGTATTTCGAACCTCGTTATGGACATGTAAACATACTGGTCTACTTGGGAATCTGTTCTCTAATGGGTTCATTGACGGTTATGAGTATTAAAGCTATCGGAATAGCGATACGGCTTACGCTTGAAGGGGTAAGCCAAGTAGCTTACCCTCAAACTTGGCTTTTTGTCACAGTTGCAGTAGTCTGTGTCATCACACAACTAAATTATTTGAATAAGGCATTGGATACATTCAATGCAGCCCTTGTATCTCCAGTATATTATGCCATGTTTACGACATTGACTATTATTGCTAGTGGTATCATGTTCAAGGACTGGTCTGGCCAGAATGCGAGCACGATAGTCTCTGAATTATGTGGATTCATTACCGTCCTTTCCGGAACTATCATTCTTCATTCAACCAGAGAACAACAACCAGTCTCCTCACAAGGATCTGTGGCATGGTATATTAGTGGGGATTCAATGAAAGTATACTCATACTGGAAGGATGAGTGCAATGCCCCATTTTTGAATTGCAACGACGAATTGGCATATCAGTCATCGTCTTCTCAAGATTCGAGCACTCCTGTCCTCTTTGCTGCTGCAAAAAGGTTTAGCGTTCAAACCCGAGCGGCTCGATCTGACGCAACTCCGGCCACACATTCTGCTGCCAACAAACGCAAACCCCAAATTCTCACAGAATCTCGAAGCACAACAACAATGGCGGCAATGGTTTCTCCATGGGGAAAACCAGGCGCTTGGGCCCTCGATTCCGAGGAACACGAAGCTCAACTCCTTAAAGAAGAGGAACAGCAGAAACAGCAGGAACTCAGCCTGGATTTTCCTTCCCTCAACGACGCCTTGGCCACCAAGCCGAAGAAGAAAGGGCAAACTCTCTCATTGGCTGAGTTCAACACCTATGGAATTAGTGGGTCGAGATCTTCTTCCCAAGGCCCCAGGCATGAGGATTTGATTGTACTACCCACCGGCCCTCGCCAACGGACGGCGGAGGAGCTCGACCGGAACAGGCTCGGTGGTGGATTCAGGAATTATGGTTCGAATGGTTCGTATGAGAGGAATAATAGGTATTCTAATGGGGATGATTCGTCTGATTCGAAATGGGGTTCGTCTAGGGTTTCTGATGAGAATAGGAGGAATAGTAATGCGTCTAATAGGGGGGATTCGAGTAAGGAATTTACATCTTCTAGGGCTGACGAGGTTGATAATTGGGCTTTAACTAAGAAACCGATGGCTGCAAATGGATTTGAGAGGAGGGAAAGAGGAGTAGGGTTTTCGGATTCGCAATCTTCAAAAGCCGACGAATCAGAGAGTTGGGTTTCTAATAAGAGCAATGTTCCGTCGGATGGAAGGAGATTTGGAGCTAACGGCGGATTTGACAGAGAGCGACGAGGAGGGTTCACGGCGAGCGGCGGCGGGGCAGATTCCGACAATTGGGGGAGGAAGAAAGAAGAAGGTAATACTGGTGGCGTCATTGGTGGTCGGCCAAAGCTTAATCTGCAGCCACGTACGCTGCCGGTTAGCGACGGGAAATCATCGGAGATATCAGGGACGACGGCGAGGCCCAAGAGTTCGAACCCATTTGGAGCGGCGAGGCCAAGGGAAGAGGTTTTAGCCGAGAAGGGACATGACTGGAAAAAGCTTGACGAGCAGCTAGAGTCGAAGATTAAGGAGGTGTCACTGGAGGAGAAGACAGAGAAATCCAACGCCTTTTCCTTTGGGAAAAAGAGCTTTGGCAATGGAAATAGCCGGGCTGCTGAGGATAGAACAGAGAAGAGCTGGAGGAAGCCGGAGTCTCCACCGCAGGAGTCACCGGAACCTCGTCCCGACAGTGGGGAAGAAAATGAAAATGGAGATTGCAAAGCCGATGGCGAACACAAAGGGGGCGAGAATGGAGCTTGA 2379 47.37 MTISENTKGLVLAMASSVFIGSSFILKKKGLKRAGATGARAGVGGYTYLLEPLWWAGMVTMIIGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFLLKERLQKMGVVGCLSCIVGSVIIVIHAPQEHTPDSVEEIWDLATQPAFLVYIAAIASLVLALMLYFEPRYGHVNILVYLGICSLMGSLTVMSIKAIGIAIRLTLEGVSQVAYPQTWLFVTVAVVCVITQLNYLNKALDTFNAALVSPVYYAMFTTLTIIASGIMFKDWSGQNASTIVSELCGFITVLSGTIILHSTREQQPVSSQGSVAWYISGDSMKVYSYWKDECNAPFLNCNDELAYQSSSSQDSSTPVLFAAAKRFSVQTRAARSDATPATHSAANKRKPQILTESRSTTTMAAMVSPWGKPGAWALDSEEHEAQLLKEEEQQKQQELSLDFPSLNDALATKPKKKGQTLSLAEFNTYGISGSRSSSQGPRHEDLIVLPTGPRQRTAEELDRNRLGGGFRNYGSNGSYERNNRYSNGDDSSDSKWGSSRVSDENRRNSNASNRGDSSKEFTSSRADEVDNWALTKKPMAANGFERRERGVGFSDSQSSKADESESWVSNKSNVPSDGRRFGANGGFDRERRGGFTASGGGADSDNWGRKKEEGNTGGVIGGRPKLNLQPRTLPVSDGKSSEISGTTARPKSSNPFGAARPREEVLAEKGHDWKKLDEQLESKIKEVSLEEKTEKSNAFSFGKKSFGNGNSRAAEDRTEKSWRKPESPPQESPEPRPDSGEENENGDCKADGEHKGGENGA 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4101585 4108668 - CmPI595203_02g004480.1 Cmu02g0448 408497

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0448 792 MobiDBLite consensus disorder prediction 585 608 - -
Cmu02g0448 792 PANTHER UNCHARACTERIZED 4 358 IPR008521 GO:0015095(InterPro)|GO:0015693(PANTHER)|GO:0015693(InterPro)|GO:0016020(PANTHER)|GO:0016020(InterPro)
Cmu02g0448 792 MobiDBLite consensus disorder prediction 462 792 - -
Cmu02g0448 792 MobiDBLite consensus disorder prediction 664 684 - -
Cmu02g0448 792 MobiDBLite consensus disorder prediction 527 541 - -
Cmu02g0448 792 MobiDBLite consensus disorder prediction 364 390 - -
Cmu02g0448 792 Pfam Plant specific eukaryotic initiation factor 4B 397 719 IPR010433 GO:0003743(InterPro)
Cmu02g0448 792 Coils Coil 409 431 - -
Cmu02g0448 792 MobiDBLite consensus disorder prediction 693 729 - -
Cmu02g0448 792 MobiDBLite consensus disorder prediction 506 526 - -
Cmu02g0448 792 Pfam Magnesium transporter NIPA 6 296 IPR008521 GO:0015095(InterPro)|GO:0015693(InterPro)|GO:0016020(InterPro)
Cmu02g0448 792 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 124 - -
Cmu02g0448 792 MobiDBLite consensus disorder prediction 744 792 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0448 K22733 - - csv:101206224 623.624
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1888 Cmu-Chr3:25879824 Cmu02g0448 Cmu-Chr2:4101585 1.90E-112 transposed
Cmu05g0345 Cmu-Chr5:2919692 Cmu02g0448 Cmu-Chr2:4101585 7.70E-107 transposed
Cmu05g1052 Cmu-Chr5:9795360 Cmu02g0448 Cmu-Chr2:4101585 2.30E-109 transposed
Cmu06g0807 Cmu-Chr6:10190419 Cmu02g0448 Cmu-Chr2:4101585 3.60E-98 transposed
Cmu08g1697 Cmu-Chr8:28493861 Cmu02g0448 Cmu-Chr2:4101585 5.80E-35 transposed
Cmu09g0981 Cmu-Chr9:9913527 Cmu02g0448 Cmu-Chr2:4101585 3.30E-123 transposed
Cmu11g0899 Cmu-Chr11:12190518 Cmu02g0448 Cmu-Chr2:4101585 4.90E-107 transposed
Cmu11g1347 Cmu-Chr11:25674119 Cmu02g0448 Cmu-Chr2:4101585 2.20E-106 transposed
Cmu02g0448 Cmu-Chr2:4101585 Cmu02g1165 Cmu-Chr2:24148932 5.50E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g119 . . . . . . . . Cmo19g00735 Cmo11g01727 . . . . Sed05g2232 Cpe04g00579 Cpe15g00581 Bhi05g01740 Tan02g0707 Cmetu01g1169 . Hepe02g0441 . . Cla02g00443 Cam02g0452 Cec02g0450 Cco02g0469 Clacu02g0453 Cmu02g0448 Cre02g0781 Cone12ag1216 Cone8ag1268 . . . Csa07g00083 . Cme01g01281 Blo04g00555 . . Bda14g00604 Bpe15g00826 . Bma03g00595 . . . . Cma11g01391 . . Car19g00555 . . . . . . . . . . . . . . . . Lsi11g01183 . Chy01g00695 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000928 3 9 3 2 2 2 4 2 2 2 2 2 3 2 2 4 2 3 3 2 2 2 2 2 2 2 2 6 7 3 86