Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0454 ATGAAAGAGATGGCAAACAGAAATGGGGCACAAGGAGCTTCCAAGGGAAAGGCCAATCCTGGTAAAGCTAAAATTTTGGCTCTAGGGAAAGCCTTACCTCCGCAACTTGTCCTTCAAGACTACCTGGTCGATGGCTATTTCAAGGACACGAGCTGCGATGATATAGACCTCAAGCAGAAGCTCACTCGACTCTGCAAGACAACAACAGTCAAAACCAGATACGTGGTGATGTCAGAAGAGATCTTGAAGAAGTACCCAGAGCTAGCAATGGAAGGCCAAGCAACTATAAAGCAGAGACTAGAGATTTGCAACAAAGCTGTGACAGACATGGCCATTGAAGCCTCACAAGCTGCCATTAAGAACTGGGGAAGGCCAGTTTCAGATATTACCCATTTAGTCTATGTCTCTTCAAGTGAAGCTCGCCTCCCTGGTGGTGATCTCTTCCTAGCAAGGGGCCTTGGACTCAGCCCTCATACTCAACGAGCCATGCTTTACTTCATGGGTTGCTCTGGAGGTGTAGCAGGCCTTAGAGTCGCCAAAGACTTAGCTGAAAACAACCCAGGAAGCCGAGTCCTGCTTGTCACTTCTGAAACCACCATTATAGGCTACAAGCCACCGAGTGCAAATCGTCCATACGATCTGGTAGGCGTGGCACTATTTGGGGATGGTGCAGGGGCGATGCTAATTGGCACAAACCCTGTTTTGGGCATTGAACGGCCACTCTTTGAGCTCCACACAGCAACCCAGAAATTTATTCCGGATACCCAGAACATAATCGATGGAAAACTGTCGGAGGAAGGTATTAGTTTCACAATAGCAAGAGAACTTCCTCAGATAATCGAAGATAACATCGAAAGTTTCTGTGAGACATTTCTTCAAACAATTGGTCTGCAAGAGAAAGAATACAACAAAATGTTCTGGGCAGTACATCCAGGTGGGCCAGCGATATTGAACAGGATGGAGAAGAGACTCGAACTGTTACCTGAGAAGCTGACGGCGAGCCGGCGAGCTCTGATGGACTATGGAAATGCGAGCAGTAATTCGATTGTGTACGTACTGGAGTACATGGTGGAAGAAAGCTTGAAAATGAAGATGGGTGGTGGGGAAATTGAGGAATGGGGATTGATTCTGGCGTTTGGACCTGGGATTTCGTTTGAAGGGATTCTGGCGAGGAATCTTGCCGTCTGA 1188 47.47 MKEMANRNGAQGASKGKANPGKAKILALGKALPPQLVLQDYLVDGYFKDTSCDDIDLKQKLTRLCKTTTVKTRYVVMSEEILKKYPELAMEGQATIKQRLEICNKAVTDMAIEASQAAIKNWGRPVSDITHLVYVSSSEARLPGGDLFLARGLGLSPHTQRAMLYFMGCSGGVAGLRVAKDLAENNPGSRVLLVTSETTIIGYKPPSANRPYDLVGVALFGDGAGAMLIGTNPVLGIERPLFELHTATQKFIPDTQNIIDGKLSEEGISFTIARELPQIIEDNIESFCETFLQTIGLQEKEYNKMFWAVHPGGPAILNRMEKRLELLPEKLTASRRALMDYGNASSNSIVYVLEYMVEESLKMKMGGGEIEEWGLILAFGPGISFEGILARNLAV 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4157614 4159392 + CmPI595203_02g004540.1 Cmu02g0454 408503

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0454 395 CDD CHS_like 23 389 - -
Cmu02g0454 395 Gene3D - 2 240 IPR016039 GO:0016746(InterPro)
Cmu02g0454 395 FunFam Chalcone synthase 2 7 240 - -
Cmu02g0454 395 Pfam Chalcone and stilbene synthases, N-terminal domain 14 233 IPR001099 -
Cmu02g0454 395 PIRSF PKS_III 9 395 IPR011141 GO:0009058(InterPro)|GO:0016747(InterPro)
Cmu02g0454 395 MobiDBLite consensus disorder prediction 1 20 - -
Cmu02g0454 395 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 17 392 IPR011141 GO:0009058(InterPro)|GO:0016747(InterPro)|GO:0016747(PANTHER)|GO:0030639(PANTHER)
Cmu02g0454 395 Pfam Chalcone and stilbene synthases, C-terminal domain 243 393 IPR012328 -
Cmu02g0454 395 SUPERFAMILY Thiolase-like 20 235 IPR016039 GO:0016746(InterPro)
Cmu02g0454 395 FunFam Chalcone synthase 1 241 394 - -
Cmu02g0454 395 Gene3D - 241 393 IPR016039 GO:0016746(InterPro)
Cmu02g0454 395 SUPERFAMILY Thiolase-like 240 391 IPR016039 GO:0016746(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0454 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0454 Cmu-Chr2:4157614 Cmu05g0035 Cmu-Chr5:459588 7.70E-133 dispersed
Cmu02g0454 Cmu-Chr2:4157614 Cmu08g1448 Cmu-Chr8:26571588 4.50E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g95 . . . . . Bpe12g00109 . . . Cmo11g01722 . . . . . Cpe04g00573 Cpe15g00577 . . . . . . . Cla02g00450 Cam02g0458 Cec02g0457 Cco02g0476 Clacu02g0459 Cmu02g0454 Cre02g0788 . . . . . . . . Blo04g00551 Blo13g00525 Bda15g01045 . . . . Bma08g00766 . . . Cma11g01399 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002086 1 1 2 2 1 2 2 2 2 2 2 2 4 2 2 4 2 4 3 2 2 2 2 2 2 2 2 2 2 2 64