Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0464 ATGTGGCTACAAAAAGGAAACAGTGTTAATAGCGTCAAAAAGGTAGCAGCAGCAGGCGGAGGGGGAAATGGGTTGGTTGCTATTGGTATAGACAGGGAAAAAGGAAGCCAAAATGCTCTCAGATGGGCCGCCGACCATTTGCTCGGAAAGGGTCAAACTGTGATTTTAATCCATGTTGTTCAGAGACCTTCCAGTGCGGCTGCTTGTTTGATTGGGGAAGCCATTGTTTGTAGTGGCGATGGTAATTTCACAGCTGATACCCCTCGTAAGCAGCAGCTCGAGATGCAGACTAGAGACATTTTTCTCACCTTCCATTGCTATTGTACTCGCAAGGATATTCAATGTCTTGATGTTATATTGGAAGACACCGATATAGTTAAAGCATTAATCGAATACGTATCGTACGCTGCAATCGATAACTTGGTGCTCGGGGCTCCTTCGAAACATGGATTTATTAGGTTTAAGACGTCGAGCATGGGCAGTAGTGTGTCAAAAGGAGCACCGGATTTCTGCAATGTATATGTCATCTCGAAGGGGAAGGTGTCATCAGTGAGAAATGCATCTCGCTCAACTCCCTTTACTTCCCCTCTACAAGACCATTTACGGAAGATTTCTAAGCCGATTGCAAAGGGAGCAATTACTCCTCGACATAAGTTTAATTTAAGAGACAGGACATCATTCAAGCCTCGCAGCTTTCAAGATGAATCAATCAAGTCACCTTTCTCTCATGGAGGAGAGAGAACTTCTATCTCAAAATGTAGTGGAGGATTCTCTGAGTCAGAATCTGACATATCCTTTGTCAGCTCTGGCAGACCAAGCACGGATCGTACTTCTTCTGTTGCATTTGACTACTCTGATTCGGCTCCCCCACGATTTTCAACCAGCTCAGAGCATAGCTTTGCATCTCTACCATTTAAACCAAAATGGACAGACCTCAGTAATCTCAATGATTTCTCATCAGTTTCAGATGAGAGCTGCAGGACATCATGTTCCTGGTCATCTCAGAACTTGGATGAAGCAGAACTTGAAATGAGGAGGCTGAAGCTAGAGCTTAAACAAACTATGGAGATGTACAGTACAGCATGTAAAGAAGCACTAACAGCAAAGCAAAAGGCGACGGAACTAAATAATTGGAGACGTGAAGAAGAACAAAAACTAGAAGAGGCACGACTTGCACAAGAGGCAGCAATGGCTATTGCAGAGCAGGAGCGAGTGAGATGCAGAGCGGCAATGGAAGCAGCTGATGCAGCTAAGAGAATTGCAGAGTTCGAATCACATAAAAGAGAAAATCTAGAGATTAAAGCACTTAAAGAAGCAGAGGAAATGCAGAGAGCATTGAAAAATCTTGCACAGAACAACATCAGATACAGGAGATATTCAATTGAGGAGGTTGAATCGGCGACGGAACATTTTGCACAATCTCGGAAGATTGGGGAAGGAGGTTATGGACCTGTCTTTCGTTGTCGTCTTGATCACACATCAGTTGCAGTCAAGGTTTTGCGTCCTGATGCATCTCAAGGAAGGACACAGTTTCAGCAAGAGATTGATATATTGAGTTGCATAAGGCATCCCAACATGGTACTTCTTCTAGGAGCATGCCCTGAATATGGCATTCTAGTGTATGAATACATGTCCAACGGAAGTTTGGAGGATCGACTCTTTCGAAAGGGGAACACTCCTGTTATTCCTTGGCAATTGAGGTTTCGAATTGCTGCCGAGATTGCTACTGGCCTTCTGTTTCTCCACCAGACAAAGCCAGAGCCATTGGTGCACCGTGACCTCAAGCCAGCTAACATATTGCTGGACCACAACTATGTTTGCAAGATAAGTGATGTTGGTTTGGCTAGACTTGTACCTGCTGTGGCCGAAAATGTAACACAATGCTACATGACTTCGGCTGCTGGAACTTTCTGCTATATAGACCCTGAGTATCAACAAACTGGAATGCTTGGGGTTAAATCTGATGTGTATTCACTAGGTATCATGTTGCTTCAACTAATTACAGCCAAGCCTCCCATGGGGTTGGCTCACCATGTTGCTCGCTCTATCGAGAAGGGGACTTTTCGGGAGCTTCTGGACCCAGCTGTGGTTGATTGGCCAGTGGAACAAGCACTTTGCTTTGCAAAATTAGCACTTCAATGTGCAGAACTTAGGCGAAAAGACAGACCAGATCTCGGCAAGGTGGTGTTGCCAGAACTTAACAAATTGAGAGAATTTGGTGAAGACAAAATGGAGTTCATGGTGTCAAGGGATAGTAGTGGATCTTTGAGCGGTTTTAGCCATGCCTCAATGGAGCAGGACATAATGAGCGACCCACAACTAATGATGGCTTCAGAAAGTTCCAAGAGCCAATCTAGTGAATCATCACAGAAAGCCTTATCCAAAGGCTTCTATCATCAGTTTCTCAGAAGGTTGGATTTCCCACAACTCCATTCATCATCTATAAATACATATTTGATTGAGTTCAGAAACAACACAAGTCTTCATTCTTCTCAAGAGAAGTTGTCTTCTCATCTCAAGCTTCTTCGACGACCTTCCACCTCAACAAAGGAAGGAGTTGCAGTAGTTCCAAAGGGCTACTGTGCGGTCTATGTTGGAGAGATCCAAAAGAAGCGTTTTATCATCCCTGTAACGTACTTGAACCAACCATGTTTTCAAGACTTGCTTAGTCAATCTGAAGAAGAATTTGGTTATTATCATCCTATGGGTGGTCTTACCATTCAGTGCAGAGAAGATATCTTCACCAATCTCATTTCTCAGTTAAATAGGCCATGA 2775 43.82 MWLQKGNSVNSVKKVAAAGGGGNGLVAIGIDREKGSQNALRWAADHLLGKGQTVILIHVVQRPSSAAACLIGEAIVCSGDGNFTADTPRKQQLEMQTRDIFLTFHCYCTRKDIQCLDVILEDTDIVKALIEYVSYAAIDNLVLGAPSKHGFIRFKTSSMGSSVSKGAPDFCNVYVISKGKVSSVRNASRSTPFTSPLQDHLRKISKPIAKGAITPRHKFNLRDRTSFKPRSFQDESIKSPFSHGGERTSISKCSGGFSESESDISFVSSGRPSTDRTSSVAFDYSDSAPPRFSTSSEHSFASLPFKPKWTDLSNLNDFSSVSDESCRTSCSWSSQNLDEAELEMRRLKLELKQTMEMYSTACKEALTAKQKATELNNWRREEEQKLEEARLAQEAAMAIAEQERVRCRAAMEAADAAKRIAEFESHKRENLEIKALKEAEEMQRALKNLAQNNIRYRRYSIEEVESATEHFAQSRKIGEGGYGPVFRCRLDHTSVAVKVLRPDASQGRTQFQQEIDILSCIRHPNMVLLLGACPEYGILVYEYMSNGSLEDRLFRKGNTPVIPWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPANILLDHNYVCKISDVGLARLVPAVAENVTQCYMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIMLLQLITAKPPMGLAHHVARSIEKGTFRELLDPAVVDWPVEQALCFAKLALQCAELRRKDRPDLGKVVLPELNKLREFGEDKMEFMVSRDSSGSLSGFSHASMEQDIMSDPQLMMASESSKSQSSESSQKALSKGFYHQFLRRLDFPQLHSSSINTYLIEFRNNTSLHSSQEKLSSHLKLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISQLNRP 924
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4211956 4219452 + CmPI595203_02g004640.1 Cmu02g0464 408513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0464 924 Gene3D Transferase(Phosphotransferase) domain 1 544 753 - -
Cmu02g0464 924 MobiDBLite consensus disorder prediction 234 258 - -
Cmu02g0464 924 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 443 543 - -
Cmu02g0464 924 FunFam U-box domain-containing protein 51 544 743 - -
Cmu02g0464 924 Coils Coil 368 403 - -
Cmu02g0464 924 PANTHER OS02G0152300 PROTEIN 26 787 IPR051348 -
Cmu02g0464 924 Pfam Protein kinase domain 472 723 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g0464 924 Gene3D Phosphorylase Kinase; domain 1 437 543 - -
Cmu02g0464 924 CDD STK_N 25 179 - -
Cmu02g0464 924 Pfam Universal stress protein family 27 168 IPR006016 -
Cmu02g0464 924 SMART serkin_6 471 733 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g0464 924 SUPERFAMILY Protein kinase-like (PK-like) 453 729 IPR011009 -
Cmu02g0464 924 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 27 176 - -
Cmu02g0464 924 Coils Coil 337 357 - -
Cmu02g0464 924 Coils Coil 428 459 - -
Cmu02g0464 924 ProSiteProfiles Protein kinase domain profile. 471 747 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g0464 924 Pfam Auxin responsive protein 837 919 IPR003676 GO:0009733(InterPro)
Cmu02g0464 924 Gene3D HUPs 25 176 IPR014729 -
Cmu02g0464 924 ProSitePatterns Serine/Threonine protein kinases active-site signature. 589 601 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0459 Cmu-Chr2:4197064 Cmu02g0464 Cmu-Chr2:4211956 5.20E-29 dispersed
Cmu02g0462 Cmu-Chr2:4204383 Cmu02g0464 Cmu-Chr2:4211956 6.40E-29 dispersed
Cmu02g0464 Cmu-Chr2:4211956 Cmu05g2688 Cmu-Chr5:35385732 7.30E-243 dispersed
Cmu11g0379 Cmu-Chr11:4156231 Cmu02g0464 Cmu-Chr2:4211956 7.20E-21 dispersed
Cmu11g0380 Cmu-Chr11:4173459 Cmu02g0464 Cmu-Chr2:4211956 2.60E-26 dispersed
Cmu02g0463 Cmu-Chr2:4206483 Cmu02g0464 Cmu-Chr2:4211956 8.30E-29 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75287 PF00069 Pkinase 3.50E-41 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0464 - - - 0.0