Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0479 ATGGGTGATACTGAAGATGCTAACACTGAGAACATGCGAAATCTTCAATGTTCGTATGGAGTATCTTCTTCTTCAGCTGGAAATCTTCCTTTCTCGATGGATCAACTTAAAATTTCCCAAATGAACTGCTCACAAATCCGTCCACTGCACTTTCAGTCAAATTTTCTTGCGGATAATAGTAGAAGAATTGGGATACCTCCTAGCCCCAACTCACCGCAGATCCCACCAATTTCACCGTATTCTCAGATCCCGATCTCGCGTCCGATGAATCAGCAAAATTATAACCCGGTGCCTACTCATTCCCGATCGTTGTCTCAGCCTTCTTTTTTCTCTCTCGATTCTTTGCCCCCTTTAAGCCCATCTCCATTTCGTGAATCCCCAACTACATCGAATTCAGATCAGGTTTCTGCAGATACATCAATGGAGGATAGGGATAACAGTTCACATTCTTTGTTGCCTCCCTCACCTTATATGAGGGCCAATTCTTCTAAGATGGGAGATTCTTTACCTCCTCGTAAAGCACATAGGCGGTCTAGTAGTGATATTCCATTTGGATTATCTTCAATGATTCAGCCATCTCCTCTTCTCCCATTCAATAGCTCTGGTGGATTGGAACGATCAATTAGTAGTAAAGAGAATGCTGGCTTATTAAAGCCCGCCAGCCAGTTTGTTAAAAGAGAACCTAGTTTGGAGAAAAGCGTTGACAACAATTTAGAAGGAATGGGTGAGAGGAAATCTGATGGGGACAGCGTGGACGACTTGTTTTCTGCTTATATGAATTTGGATAATATCGATTTGTTCAACTCTTCTGGGACTAACGACAAGAATGGTCAAGAGAATCGAGAGGATTTGGATAGTAGGGGTAGTGGAACAAAGACAAATGGGGGTGAGAGCAGTGATAATGAAGCAGAAAGCAGTGTAAATGAAAGCGGGGATAGCGCTCAAATGCCTGGATTGAATTCATCTGCTGAGAAGAGGGAAGGGATCAAACGGACCGCAGGAGGAGATATTGCTCCAACTACCAGACATTACCGAAGTGTCTCCATGGATAGTTTCATGGGCAAGTTGCAGTTTGGTGATGAGTCTCCCAAAATGCCTCCCACACCACCTGGCGTTCGCCCGGGGCAACTTTCTTCAAACAACTTAGTTGATGGTAATTCTGCTCCATTCAGTTTGGAGTTTGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAATGACAAACTTGCCGAGATTGCTTTGACTGATCCCAAGCGTGCAAAGAGGATCTTGGCAAACCGTCAGTCTGCTGCTCGATCGAAAGAGCGAAAGATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACACTGTCCGCTCAACTCACACTTCTACAGAGAGATTCCGTGGGCCTTACAAACCAGAATAATGAACTGAAGTTTCGACTACAAGCCATGGAACAACAAGCACAACTACGGGATGCTCTTAACGAAGCCTTAACCGCGGAGGTTCAGAGATTGAAACTCGCTACAACAGAGCTAAATGCGCAGTCTCATCCCTCCAACGGAGTAATGCCCCAATCTTCCATCAATCACCATGGCCTACAGCTTCAGCTTCAGCACCAGCAACAACAACAGATCCAGCAGAATGGGAATGCAACCACAAAACCAGAATCCAACCAATAA 1698 44.82 MGDTEDANTENMRNLQCSYGVSSSSAGNLPFSMDQLKISQMNCSQIRPLHFQSNFLADNSRRIGIPPSPNSPQIPPISPYSQIPISRPMNQQNYNPVPTHSRSLSQPSFFSLDSLPPLSPSPFRESPTTSNSDQVSADTSMEDRDNSSHSLLPPSPYMRANSSKMGDSLPPRKAHRRSSSDIPFGLSSMIQPSPLLPFNSSGGLERSISSKENAGLLKPASQFVKREPSLEKSVDNNLEGMGERKSDGDSVDDLFSAYMNLDNIDLFNSSGTNDKNGQENREDLDSRGSGTKTNGGESSDNEAESSVNESGDSAQMPGLNSSAEKREGIKRTAGGDIAPTTRHYRSVSMDSFMGKLQFGDESPKMPPTPPGVRPGQLSSNNLVDGNSAPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLATTELNAQSHPSNGVMPQSSINHHGLQLQLQHQQQQQIQQNGNATTKPESNQ 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4330273 4332668 - CmPI595203_02g004790.1 Cmu02g0479 408528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0479 565 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 156 553 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cmu02g0479 565 SMART brlzneu 418 482 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g0479 565 FunFam probable transcription factor PosF21 421 474 - -
Cmu02g0479 565 MobiDBLite consensus disorder prediction 289 320 - -
Cmu02g0479 565 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 420 483 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g0479 565 Coils Coil 501 521 - -
Cmu02g0479 565 Coils Coil 438 493 - -
Cmu02g0479 565 MobiDBLite consensus disorder prediction 60 188 - -
Cmu02g0479 565 Gene3D - 421 473 - -
Cmu02g0479 565 MobiDBLite consensus disorder prediction 83 115 - -
Cmu02g0479 565 MobiDBLite consensus disorder prediction 267 343 - -
Cmu02g0479 565 MobiDBLite consensus disorder prediction 356 380 - -
Cmu02g0479 565 SUPERFAMILY Leucine zipper domain 422 473 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g0479 565 MobiDBLite consensus disorder prediction 219 250 - -
Cmu02g0479 565 Pfam bZIP transcription factor 422 476 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g0479 565 CDD bZIP_plant_RF2 423 472 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g0479 565 MobiDBLite consensus disorder prediction 538 565 - -
Cmu02g0479 565 MobiDBLite consensus disorder prediction 228 250 - -
Cmu02g0479 565 MobiDBLite consensus disorder prediction 68 82 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0479 Cmu-Chr2:4330273 Cmu08g0640 Cmu-Chr8:18607063 5.20E-42 dispersed
Cmu02g0479 Cmu-Chr2:4330273 Cmu02g0480 Cmu-Chr2:4342490 2.70E-272 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5696 PF00170 bZIP_1 7.50E-09 CL0018 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0479 - - - 0.0