Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0480 ATGGGTGATACTGAAGATGCTCGTACTGATAACCTACGAAATCTTCAATGTTCGTTTGGAACATCTTCCTCTTCTGCTTTAAAGCATCATTTCTCTATGGATCAACTTAAAATTTCTCAAATGAACTGCTCACAAGGCCGTGCACAGCATTTTCAGTCGAATTTTCTTGGAGATAATAGTAGAAGAATTGGGATACCTCCTTGTCCCAACTCACCGCAGATCCCACCAATCTCACCGTATTCCCAGATCCCGGTGTCGCGTCCGATGAACCAGCAGAGTTATAACTCAGTTCCTACTCATTCTCGATCGTTATCTCAGCCTTCTTTTTTCTCTCTCGATTCTTTGCCCCCTTTAAGTCCGTCTCCATTTCGTGACTCCCCTTCTACATCGAATTCAGATCAGGTTTCTGCTGATACGTCAATGGAGGATAGGGATGCCAGTTCACATTCTTTGTTGCCTCCCTCACCTTATACGAGAGCCAATTCTTCGAAGATGGGTGATGCTTTACCTCCTCGTAAAGCCCATAGGCGTTCTAACAGTGATATTCCATTTGGATTATCTTCGATGATTCAGTCATCTCCTCTTCTCCCTTTTAGTGGTTCAGGTGGATTGGAGCGATCAACTAGTAGTAAAGAGAATGCGGGAATATTTAAGCCGGCCAGCCAGTTTGTTAAAAGAGAGCCTAGTTTGGAGAAAAGCATTGATAACAATCTGGAAGGAATGGGTGAAAAGAAGTCTGAAGGGGACACTGTGGATGATTTATTCTCTGCTTATATGAATTTGGATAATATTGATTTGTTCAACTCCTCAGGGACCAACGACAAGAATGGTCATGAGAATCGGGAGGATTTGGATAGTAGAGGTAGCGGAACAAAAACAGGGGGTGAGAGCAGCGATAATGAAGCAGAAAGCAGTGTGAACGAAAGTGGGGATAACTCTCAAGTGCCTGGATTGAATTCGTCTGCTGAGAAGAGGGAAGGGATTAAACGGACTGCAGGGGGAGATATTGCTCCAAATAACAGACATTACCGGAGTATCTCCATGGATAGTTTTATGGGCAAGTTACAGTTTGGTGATGAGTCACCGAAAATGCCTCCTACGCCGCCCGGCATTCGTCCAGGGCAACTTTCTTCAAACAACCTAGTTGACGGTAATTCAACTCCATTCAGCTTGGAGTTCGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAATGACAAACTTGCGGAGATTGCACTAACCGATCCCAAGCGTGCAAAGAGGATTTTGGCTAACCGTCAATCTGCTGCTCGATCAAAAGAACGGAAAATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACGCTGTCTGCCCAACTCACGCTTCTGCAGCGAGACTCTGTTGGACTTACAAACCAGAATAATGAACTTAAGTTCCGTCTCCAAGCCATGGAACAGCAAGCACAACTACGGGATGCTCTAAATGAAGCATTAACTGCGGAGGTTCAGAGATTGAAGCTCACTACAACCAATATAAACGCGCAATCTCATCCCTCAGACGGGGTAATGGCTCAATCTTCTATGAATCACCACGGACTCCAACTTCAGCTTCAGCAGCAGCAGCAACAACATCACCAACAACAACAGCAACAACATATGCAGCAGAATGGCAGTGCAACCGCAAAACCAGAGTCCAACCAATAA 1719 44.91 MGDTEDARTDNLRNLQCSFGTSSSSALKHHFSMDQLKISQMNCSQGRAQHFQSNFLGDNSRRIGIPPCPNSPQIPPISPYSQIPVSRPMNQQSYNSVPTHSRSLSQPSFFSLDSLPPLSPSPFRDSPSTSNSDQVSADTSMEDRDASSHSLLPPSPYTRANSSKMGDALPPRKAHRRSNSDIPFGLSSMIQSSPLLPFSGSGGLERSTSSKENAGIFKPASQFVKREPSLEKSIDNNLEGMGEKKSEGDTVDDLFSAYMNLDNIDLFNSSGTNDKNGHENREDLDSRGSGTKTGGESSDNEAESSVNESGDNSQVPGLNSSAEKREGIKRTAGGDIAPNNRHYRSISMDSFMGKLQFGDESPKMPPTPPGIRPGQLSSNNLVDGNSTPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLTTTNINAQSHPSDGVMAQSSMNHHGLQLQLQQQQQQHHQQQQQQHMQQNGSATAKPESNQ 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4342490 4346294 - CmPI595203_02g004800.1 Cmu02g0480 408529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0480 572 SMART brlzneu 417 481 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g0480 572 Coils Coil 437 492 - -
Cmu02g0480 572 MobiDBLite consensus disorder prediction 57 249 - -
Cmu02g0480 572 CDD bZIP_plant_RF2 422 471 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g0480 572 MobiDBLite consensus disorder prediction 228 249 - -
Cmu02g0480 572 Pfam bZIP transcription factor 421 475 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g0480 572 SUPERFAMILY Leucine zipper domain 421 472 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g0480 572 MobiDBLite consensus disorder prediction 290 320 - -
Cmu02g0480 572 FunFam probable transcription factor PosF21 420 473 - -
Cmu02g0480 572 MobiDBLite consensus disorder prediction 83 115 - -
Cmu02g0480 572 MobiDBLite consensus disorder prediction 268 342 - -
Cmu02g0480 572 Coils Coil 535 555 - -
Cmu02g0480 572 Gene3D - 420 472 - -
Cmu02g0480 572 MobiDBLite consensus disorder prediction 355 381 - -
Cmu02g0480 572 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 156 560 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cmu02g0480 572 MobiDBLite consensus disorder prediction 515 572 - -
Cmu02g0480 572 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 419 482 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g0480 572 MobiDBLite consensus disorder prediction 181 216 - -
Cmu02g0480 572 MobiDBLite consensus disorder prediction 275 289 - -
Cmu02g0480 572 MobiDBLite consensus disorder prediction 68 82 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0480 Cmu-Chr2:4342490 Cmu08g0640 Cmu-Chr8:18607063 2.20E-40 dispersed
Cmu02g0479 Cmu-Chr2:4330273 Cmu02g0480 Cmu-Chr2:4342490 2.70E-272 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5697 PF00170 bZIP_1 8.80E-09 CL0018 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0480 - - - 0.0