Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu02g0480 | ATGGGTGATACTGAAGATGCTCGTACTGATAACCTACGAAATCTTCAATGTTCGTTTGGAACATCTTCCTCTTCTGCTTTAAAGCATCATTTCTCTATGGATCAACTTAAAATTTCTCAAATGAACTGCTCACAAGGCCGTGCACAGCATTTTCAGTCGAATTTTCTTGGAGATAATAGTAGAAGAATTGGGATACCTCCTTGTCCCAACTCACCGCAGATCCCACCAATCTCACCGTATTCCCAGATCCCGGTGTCGCGTCCGATGAACCAGCAGAGTTATAACTCAGTTCCTACTCATTCTCGATCGTTATCTCAGCCTTCTTTTTTCTCTCTCGATTCTTTGCCCCCTTTAAGTCCGTCTCCATTTCGTGACTCCCCTTCTACATCGAATTCAGATCAGGTTTCTGCTGATACGTCAATGGAGGATAGGGATGCCAGTTCACATTCTTTGTTGCCTCCCTCACCTTATACGAGAGCCAATTCTTCGAAGATGGGTGATGCTTTACCTCCTCGTAAAGCCCATAGGCGTTCTAACAGTGATATTCCATTTGGATTATCTTCGATGATTCAGTCATCTCCTCTTCTCCCTTTTAGTGGTTCAGGTGGATTGGAGCGATCAACTAGTAGTAAAGAGAATGCGGGAATATTTAAGCCGGCCAGCCAGTTTGTTAAAAGAGAGCCTAGTTTGGAGAAAAGCATTGATAACAATCTGGAAGGAATGGGTGAAAAGAAGTCTGAAGGGGACACTGTGGATGATTTATTCTCTGCTTATATGAATTTGGATAATATTGATTTGTTCAACTCCTCAGGGACCAACGACAAGAATGGTCATGAGAATCGGGAGGATTTGGATAGTAGAGGTAGCGGAACAAAAACAGGGGGTGAGAGCAGCGATAATGAAGCAGAAAGCAGTGTGAACGAAAGTGGGGATAACTCTCAAGTGCCTGGATTGAATTCGTCTGCTGAGAAGAGGGAAGGGATTAAACGGACTGCAGGGGGAGATATTGCTCCAAATAACAGACATTACCGGAGTATCTCCATGGATAGTTTTATGGGCAAGTTACAGTTTGGTGATGAGTCACCGAAAATGCCTCCTACGCCGCCCGGCATTCGTCCAGGGCAACTTTCTTCAAACAACCTAGTTGACGGTAATTCAACTCCATTCAGCTTGGAGTTCGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAATGACAAACTTGCGGAGATTGCACTAACCGATCCCAAGCGTGCAAAGAGGATTTTGGCTAACCGTCAATCTGCTGCTCGATCAAAAGAACGGAAAATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACGCTGTCTGCCCAACTCACGCTTCTGCAGCGAGACTCTGTTGGACTTACAAACCAGAATAATGAACTTAAGTTCCGTCTCCAAGCCATGGAACAGCAAGCACAACTACGGGATGCTCTAAATGAAGCATTAACTGCGGAGGTTCAGAGATTGAAGCTCACTACAACCAATATAAACGCGCAATCTCATCCCTCAGACGGGGTAATGGCTCAATCTTCTATGAATCACCACGGACTCCAACTTCAGCTTCAGCAGCAGCAGCAACAACATCACCAACAACAACAGCAACAACATATGCAGCAGAATGGCAGTGCAACCGCAAAACCAGAGTCCAACCAATAA | 1719 | 44.91 | MGDTEDARTDNLRNLQCSFGTSSSSALKHHFSMDQLKISQMNCSQGRAQHFQSNFLGDNSRRIGIPPCPNSPQIPPISPYSQIPVSRPMNQQSYNSVPTHSRSLSQPSFFSLDSLPPLSPSPFRDSPSTSNSDQVSADTSMEDRDASSHSLLPPSPYTRANSSKMGDALPPRKAHRRSNSDIPFGLSSMIQSSPLLPFSGSGGLERSTSSKENAGIFKPASQFVKREPSLEKSIDNNLEGMGEKKSEGDTVDDLFSAYMNLDNIDLFNSSGTNDKNGHENREDLDSRGSGTKTGGESSDNEAESSVNESGDNSQVPGLNSSAEKREGIKRTAGGDIAPNNRHYRSISMDSFMGKLQFGDESPKMPPTPPGIRPGQLSSNNLVDGNSTPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLTTTNINAQSHPSDGVMAQSSMNHHGLQLQLQQQQQQHHQQQQQQHMQQNGSATAKPESNQ | 572 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 4342490 | 4346294 | - | CmPI595203_02g004800.1 | Cmu02g0480 | 408529 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu02g0480 | 572 | SMART | brlzneu | 417 | 481 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu02g0480 | 572 | Coils | Coil | 437 | 492 | - | - | |
Cmu02g0480 | 572 | MobiDBLite | consensus disorder prediction | 57 | 249 | - | - | |
Cmu02g0480 | 572 | CDD | bZIP_plant_RF2 | 422 | 471 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu02g0480 | 572 | MobiDBLite | consensus disorder prediction | 228 | 249 | - | - | |
Cmu02g0480 | 572 | Pfam | bZIP transcription factor | 421 | 475 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu02g0480 | 572 | SUPERFAMILY | Leucine zipper domain | 421 | 472 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu02g0480 | 572 | MobiDBLite | consensus disorder prediction | 290 | 320 | - | - | |
Cmu02g0480 | 572 | FunFam | probable transcription factor PosF21 | 420 | 473 | - | - | |
Cmu02g0480 | 572 | MobiDBLite | consensus disorder prediction | 83 | 115 | - | - | |
Cmu02g0480 | 572 | MobiDBLite | consensus disorder prediction | 268 | 342 | - | - | |
Cmu02g0480 | 572 | Coils | Coil | 535 | 555 | - | - | |
Cmu02g0480 | 572 | Gene3D | - | 420 | 472 | - | - | |
Cmu02g0480 | 572 | MobiDBLite | consensus disorder prediction | 355 | 381 | - | - | |
Cmu02g0480 | 572 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 156 | 560 | - | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cmu02g0480 | 572 | MobiDBLite | consensus disorder prediction | 515 | 572 | - | - | |
Cmu02g0480 | 572 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 419 | 482 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu02g0480 | 572 | MobiDBLite | consensus disorder prediction | 181 | 216 | - | - | |
Cmu02g0480 | 572 | MobiDBLite | consensus disorder prediction | 275 | 289 | - | - | |
Cmu02g0480 | 572 | MobiDBLite | consensus disorder prediction | 68 | 82 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu02g0480 | Cmu-Chr2:4342490 | Cmu08g0640 | Cmu-Chr8:18607063 | 2.20E-40 | dispersed | |
Cmu02g0479 | Cmu-Chr2:4330273 | Cmu02g0480 | Cmu-Chr2:4342490 | 2.70E-272 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5697 | PF00170 | bZIP_1 | 8.80E-09 | CL0018 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu02g0480 | - | - | - | 0.0 |