Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0491 ATGGGGGCGGTTGCTGGAGAGGAGTTGATGAAGTTGGAGAAAATGCAGGGGATAAATGCTCGTGAAGAGAAAATTCTTGTTTTAGTAAGGCTGAGACCCTTGAACGAGAAGGAGATTATGATGAATGAAGCTGCAGATTGGGAGTGTATCAATGATACTAGTATCTTGTACCGGAATACCTTACGGGAGGGGTCCACATTTCCAAGTGCCTATACTTTTGATAGAGTATTTCGAGGTGATTGCTCTACAAAGCAGGTGTACGAGGAAGGAGCCAGAGAAATTGCATTTTCTGTAGTCAGTGGTATCAACTCAAGTATTTTTGCATATGGTCAGACAAGCAGTGGAAAGACATATACCATGAATGGAATTCTTGAATATTCAGTGGCGGATATATTTGATTACATTAGGAGGCATGAAGAAAGAGCATTCATTGTGAAGTTTTCAGCTATTGAGATATATAATGAAGCTGTTAGAGACCTCTTGAGCACAGATACTAGTCCTCTCAGGCTGCTAGATGACCAGGAGCGAGGGACTATTGTGGAGAAAGTCACTGAGGAAACTTTGAGGGACTGGAACCATTTAAGGGAGCTCATTTCAATTTGTGAAGCTCAACGACGGATTGGAGAGACCTCGCTGAATGAGAAAAGTTCTAGATCTCATCAAATTATTAAACTGACAATTGAAAGTTCTGCTCGAGAGTTTTTAGGAAAAGACAATTCAACGACACTTGCTGCTAGTGTGAGTTTTATTGATTTAGCTGGGAGTGAACGTGCAGCTCAAGCATTATCAGCAGGGACGAGACTGAAAGAAGGATGTCACATAAATCGCAGTTTATTGACTCTGGGTACTGTCATTCGCAAATTAAGCAAAGGAAGAAATGGTCATATCAATTACAGAGATTCTAAGCTGACACGAATATTACAGCCCTGCTTAGGTGGCAATGCTAGAACAGCCATCATCTGTACATTGAGCCCTGCAAGAAGTCACGTTGAACAAACTAGAAACACTCTCTTGTTTGCTTGTTGTGCAAAAGAGGTGACAACAAAAGCTCAAGTCAACGTGGTCATGTCTGATAAGGCTTTGGTTAAGCATTTGCAGAAAGAGTTAGCGAGATTGGAGAGTGAGTTGAGAACTCCTGCCCCTGTTTCGTCCAGTTCTGAATATGCAGCCCTATTGAAAAAGAAAGATCTTCAAATTGAGAAGATGGCGAAGGAGATTAGAGAACTCACTAAGCAAAGGGATCTCGCTCAATCCCGAGTTGAAGATTTACTTCGTATGGTTGGACATGATGATGTCTCGAGAAAGGATGTCAAAACTAGTTATTCCAAATTGCAAGCAAGGGATGGTTTAGAGTATGAAGGTTCACCATCTGAAACTTCAAGTGTGGCTGATTTTCGTGGTAGAGATATGGGTGGAAAATCCTTTAACAATCCTCATTATTATGATGGAGACAGTGATGATGGAAAGAGGTTCCTTGACTCTCACTCAGGTCAAAGTGGAATTACAACCGCTCTTGCAATAGCAGAAGATTCCGATGACTGCAAGGAAGTTCAATGTATTGAAATGGGGGAGTCAGTCAGAGACGATGGCTTATCACCGCTTGCTGCTGACAATGGTGAATTTAGAGGAATGCCTTTTACTAGGTCAAACGATGGAAATATAATAGGTCATGAATTGATATCAACCCCTGTGAATGGGAACAGAGAAGCACACCAGATTCAAAATAATTCAACAAATGGTCAACCGGAGCAAAGACTCCATGATGTAAGAAGGATGGACATTAATTCTATGAGTAGTCCCTACCGCGACGATGCATGTTCAAAGGTTGCTGCTGACATGTCAAGCTCCAGAAGCTTGAAGCTAGCCAGAAGCTGGAGTTGTAGAGCCAATTTCACTACTGAGCTATCACCTGATAGAGGAGAGACCACCCCTCCTCATGGATTTGACAAAAGCTTTCCTGGAAGACCTGAAGGTTTTGAACGGAAACTCCCACAATTAGACTTTGATGGCAGCCTCCCGAGACTTGATTCTCAGTCTTCTATAGGAAGTGCTCGGAGCATCAAAACTTCTGCGGATGAAGACGTTACTCGCTTAGACGCCTTTGTTGCTGGGTTGAAGAAAATGAGAAACTCAGAGTGTGGGAAAGAACTTGCTGAGGGGCAGGTTCTGGAGGATGGACAAGAAATAGATTTCTTAAAGAACACAAATTATGTTGGAGGTGAGGCATTGGCAGATGGATTAGTCACATCGGATTGGAACGAAGAATTTCAGAGGCAGCAGAGGATGATAATTGAGCTTTGGCAAACTTGCAACGTTTCGATTGTCCACAGAACGTACTTTTTCTTGCTCTTCCAAGGCGATCCTGCCGATTCCATTTACATGGAAGTAGAGCTTAGGAGACTGACTTTTCTAAAGCAAACATTTTATTACGGCAATGCAGCTATGGATGATGGCCGGAAAGTCTCTTTTTCTTCAAGTACAAGGGATCTTCGTCGCGAGAGAGAAACATTGAGTAAGCTAATGCAGAAGCGATTCTCAGAAGATGAAAGAAAAAGATTGTTCCAGAAGTGGGGAATTGCGTTGAATTCGAAACGCCGAAGGCTGCAGCTGGTCAGCCAGTTGTGGAGCGATCCGAAGAACATGAACCATGTAACAGAGAGTGCAGCCATTGTTGCCAAGCTTGTGAAGTTTGCTGAGCAAGGACAGGCCCTCAAGGGGAACTTTGGTCTCAGCTTCATTACACCTCCACAAAAAAGTAGATCATTTAGCTGGATAAACAATAGGACTACTCTTATGTGA 2799 42.8 MGAVAGEELMKLEKMQGINAREEKILVLVRLRPLNEKEIMMNEAADWECINDTSILYRNTLREGSTFPSAYTFDRVFRGDCSTKQVYEEGAREIAFSVVSGINSSIFAYGQTSSGKTYTMNGILEYSVADIFDYIRRHEERAFIVKFSAIEIYNEAVRDLLSTDTSPLRLLDDQERGTIVEKVTEETLRDWNHLRELISICEAQRRIGETSLNEKSSRSHQIIKLTIESSAREFLGKDNSTTLAASVSFIDLAGSERAAQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHINYRDSKLTRILQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRTPAPVSSSSEYAALLKKKDLQIEKMAKEIRELTKQRDLAQSRVEDLLRMVGHDDVSRKDVKTSYSKLQARDGLEYEGSPSETSSVADFRGRDMGGKSFNNPHYYDGDSDDGKRFLDSHSGQSGITTALAIAEDSDDCKEVQCIEMGESVRDDGLSPLAADNGEFRGMPFTRSNDGNIIGHELISTPVNGNREAHQIQNNSTNGQPEQRLHDVRRMDINSMSSPYRDDACSKVAADMSSSRSLKLARSWSCRANFTTELSPDRGETTPPHGFDKSFPGRPEGFERKLPQLDFDGSLPRLDSQSSIGSARSIKTSADEDVTRLDAFVAGLKKMRNSECGKELAEGQVLEDGQEIDFLKNTNYVGGEALADGLVTSDWNEEFQRQQRMIIELWQTCNVSIVHRTYFFLLFQGDPADSIYMEVELRRLTFLKQTFYYGNAAMDDGRKVSFSSSTRDLRRERETLSKLMQKRFSEDERKRLFQKWGIALNSKRRRLQLVSQLWSDPKNMNHVTESAAIVAKLVKFAEQGQALKGNFGLSFITPPQKSRSFSWINNRTTLM 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4467633 4474205 - CmPI595203_02g004910.1 Cmu02g0491 408540

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0491 932 CDD KISc_CENP_E 24 346 - -
Cmu02g0491 932 Gene3D Kinesin motor domain 16 377 IPR036961 -
Cmu02g0491 932 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 378 IPR027417 -
Cmu02g0491 932 ProSiteProfiles Kinesin motor domain profile. 24 346 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cmu02g0491 932 FunFam Kinesin-like protein 18 377 - -
Cmu02g0491 932 ProSitePatterns Kinesin motor domain signature. 245 256 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Cmu02g0491 932 Coils Coil 392 426 - -
Cmu02g0491 932 PRINTS Kinesin heavy chain signature 101 122 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cmu02g0491 932 PRINTS Kinesin heavy chain signature 246 264 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cmu02g0491 932 PRINTS Kinesin heavy chain signature 296 317 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cmu02g0491 932 PRINTS Kinesin heavy chain signature 210 227 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cmu02g0491 932 SMART kinesin_4 22 354 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cmu02g0491 932 Pfam Domain of unknown function (DUF3490) 755 914 IPR021881 -
Cmu02g0491 932 MobiDBLite consensus disorder prediction 448 495 - -
Cmu02g0491 932 Coils Coil 355 375 - -
Cmu02g0491 932 MobiDBLite consensus disorder prediction 634 688 - -
Cmu02g0491 932 PANTHER CENTROMERE PROTEIN E 20 924 IPR027640 GO:0003777(InterPro)|GO:0007018(InterPro)
Cmu02g0491 932 MobiDBLite consensus disorder prediction 672 688 - -
Cmu02g0491 932 Pfam Kinesin motor domain 30 346 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0491 K11498 - - csv:101213783 1724.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0491 Cmu-Chr2:4467633 Cmu04g1126 Cmu-Chr4:25851202 2.80E-165 dispersed
Cmu02g0491 Cmu-Chr2:4467633 Cmu02g0500 Cmu-Chr2:4564199 1.20E-67 proximal
Cmu07g0832 Cmu-Chr7:21182884 Cmu02g0491 Cmu-Chr2:4467633 7.40E-115 transposed
Cmu11g0010 Cmu-Chr11:536054 Cmu02g0491 Cmu-Chr2:4467633 2.00E-147 transposed
Cmu02g0491 Cmu-Chr2:4467633 Cmu08g1395 Cmu-Chr8:26109978 1.70E-218 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g46 Blo02g00649 . . Bda08g00962 . Bpe12g00095 . . Cmo19g00704 . . . . . . Cpe04g00100 Cpe15g00563 Bhi05g01255 . . . . . . Cla02g00484 Cam02g0492 Cec02g0493 Cco02g0498 Clacu02g0496 Cmu02g0491 Cre02g0824 Cone12ag1189 Cone8ag1236 . Cone10ag1095 . Csa07g00039 . Cme01g01338 Blo04g00541 Blo13g00533 Bda15g01063 Bda14g00581 Bpe15g00840 Bpe05g00313 Bma03g00574 . . . . . Cma19g00692 . Car19g00536 . . . . . . . . . . . . . . . . Lsi11g01139 . Chy01g00742 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004297 2 1 3 1 3 1 2 1 1 1 1 1 3 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 43