Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0501 ATGAAGATCCGTTGCGATGTTTGTGATCAAGCTGAGGCCTCTGTTTTTTGTTATGCTGATGAAGCTGCTCTTTGCCATGGTTGCGATCTCCATGTTCATCGCGCTAATAAGCTCGCTGGAAAACACTCTCGATTCTCTTTACTTCACCCTATCAAAAAGGATTCTCCTCGTTGCGATATCTGTCAGGAACGGCGCGCGCTTGTATTTTGTCAACAAGATAGGGCAATTCTTTGCAGAGAATGCGACATTTCGATTCACGAAGCGAACGAACATACACAGAAGCACAATCGATTTCTTCTTACGGGTGTGAAGCTTTCTTCGACTTGTTATTCGCATCAAACATCTTCGTCCTCCAATGGCTGTGATGCCGCCATGGATGTTAAAACTGGAAGCTCCAACGCTTGCAGCAAAAGACCTAAAATGGCGGCGAACGAAATCTCCAGCTCTCATTCCGCTGAAAAAGCTACTCCGTCGACAAGTAATTACAAGGTTGAAGACGGCCAAGCATTAAGCGACGGCGGTTCGTTCTCGACAAGCAGCATATCGGAATATTTAGAGACATTGCCGGGATGGTGCGTGGAGGAGTTTCTTGATCCTTCCGCCGCTGCCAATCGTTTCTGTAAGTTTAATGGCGAAATTGTTGGATTTGGGAATCAAAATCTGGAAAGGCAACAAGAATCACTAAGCACTCTCAAGAACACCTTCGAAATTTTAGGTAAAAATTCTCAAATTATTATTACTAGGTGTTGGAATGGAATACTTGGGATCTCCATGAAAACTTGTAAAGATGAAAAAATGCAACAGTGGGTGATCTGA 816 43.87 MKIRCDVCDQAEASVFCYADEAALCHGCDLHVHRANKLAGKHSRFSLLHPIKKDSPRCDICQERRALVFCQQDRAILCRECDISIHEANEHTQKHNRFLLTGVKLSSTCYSHQTSSSSNGCDAAMDVKTGSSNACSKRPKMAANEISSSHSAEKATPSTSNYKVEDGQALSDGGSFSTSSISEYLETLPGWCVEEFLDPSAAANRFCKFNGEIVGFGNQNLERQQESLSTLKNTFEILGKNSQIIITRCWNGILGISMKTCKDEKMQQWVI 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4577916 4579011 - CmPI595203_02g005010.1 Cmu02g0501 408550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0501 271 CDD Bbox1_BBX-like 58 100 IPR049808 -
Cmu02g0501 271 CDD Bbox1_BBX-like 5 47 IPR049808 -
Cmu02g0501 271 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Cmu02g0501 271 Pfam B-box zinc finger 3 46 IPR000315 GO:0008270(InterPro)
Cmu02g0501 271 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270(InterPro)
Cmu02g0501 271 FunFam B-box zinc finger protein 21 1 98 - -
Cmu02g0501 271 Gene3D Classic Zinc Finger 1 100 - -
Cmu02g0501 271 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cmu02g0501 271 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 216 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cmu02g0501 271 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cmu02g0501 271 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
Cmu02g0501 271 MobiDBLite consensus disorder prediction 143 164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0501 Cmu-Chr2:4577916 Cmu09g1349 Cmu-Chr9:19879976 2.50E-34 dispersed
Cmu11g0403 Cmu-Chr11:4458319 Cmu02g0501 Cmu-Chr2:4577916 4.10E-47 wgd
Cmu02g0501 Cmu-Chr2:4577916 Cmu08g1398 Cmu-Chr8:26139667 4.10E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5700 PF00643 zf-B_box 3.30E-07 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0501 - - - 0.0