Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0505 ATGGGCGATACCCGTGGTGGTTGCTGTCCATCCATGGATCTCTTCCGCTCCGAGCCGATGCAGCTGGTCCAGCTCATCATTCCAATCGAGTCTGCGCATCGCACCATCTCCTACCTCGGTGATCTCGGCCTTCTTCAGTTCAAAGATCTCAATGCCGATAAAAGCCCATTCCAGCGTACTTATGCTGCACAGATTAAAAGATGTGGAGAGATGGCACGCAAATTGAATTTTTTCAAGGAACAGATGTTGAAGGCTGGATTGTCAAGCAAAAGCTCTGTGTCACAAGTTGATATCAATATAGATGACCTTGAGATCAAACTTGGTGAGCTTGAGGCAGAACTGGTTGAGATAAATGCTAATAGTGAGAAGCTGCAGCGTTCCTACAACGAACTTGTGGAGTATAAGCTTGTTCTCCAGAAGGCTGGAGAGTTTTTCAGTGCAGCACAGAGCAGTGCCGTAGAGCAGCAAAGGGAGTTTGAATCACGGCGAATTGGTGGAGATTCAATAGAAGTTCCGTTGTTGTTGGAACAAGAATCGTTTGTGGATCAGTCAAAGCCGGTTAATTTGGGATTTCTCTCTGGTCTTGTTCCTCGGGAAAAGTCTATGGCATTTGAAAGGATACTTTTTCGTGCTACCAGGGGCAATGTGTTTCTGAAGCAGGCTGCAGTTGAGGACCCTGTTGCAGATCCTGTTTCTGGAGAGAAGGTTGAGAAAAACGTGTTTATTGTTTTCTACTCTGGAGAAAGAGCAAAGAATAAGATTCTAAAAATATGCGAGGCATTTGGTGCAAATCGATACCCTTTTACTGAGGACTTGGGGAAACAAGCCCAAATGATTGCCGAGGTTTCTGGGAAACTGTCTGAGCTGAAGACTACAATAGATTTAGGGCTGCTGCACCGGGGTAATCTGTTGCAGACTATTGGAGAACATTTTGAAAATTGGAATCTCCTGGCGAGGAAGGAAAAGTCCATATACCATATCTTGAACATGCTTAGCCTTGATGTAACAAAAAAATGTCTGGTTGCTGAGGGGTGGGGTCCTGTTTTTGCAACAAAACAGATTCAAGATGCACTCCAGCGAGCAGCAGCTGATTCCAACTCCCAAGTTGGACCAATTTTCCAGGTTTTATTAACTACCGAAGCACCACCTACTTATTTTCGGACAAACAAATTCTCCTCGGCTTTTCAAGAAATTGTGGATGCATATGGGGTGGCAAGGTATCAAGAGGCAAATCCTGGTGTATACACCATTGTCACGTTCCCATTTCTATTTGCTGTTATGTTTGGCGATTGGGGGCATGGAATATGTCTGTTCCTTGCAACCCTGTATTTTATACTACGGGAAAAGAAACTTTCTTCTCAGAAGCTTGGAGATATCACTGAAATGGCCTTTGGTGGACGCTATGTCATTTTGATGATGTCACTTTTTTCGATATACACAGGTCTGATCTATAATGAGTTCTTTTCTGTCCCATTTGGACTGTTTGGTCGCTCAGCCTATGAATGTCGTAGTTCTGATTGCAGTGATTCTACCACTATGGGGTTGATAAAGGTGGGTTCTACGTATCCATTTGGCTTGGATCCTGTATGGCACGGCACTCGAAGCGAGCTTCCATTTCTTAACTCTCTGAAAATGAAAATGTCGATCCTCCTTGGAGTTGCACAAATGAACCTTGGAATTATAATAAGCTATTTCAATGCTACATTTTTCAGGAACAGCATTAATATTTGGTTCCAATTCCTGCCACAGATGATATTCCTAAACAGCCTTTTCGGCTATCTTTCCCTTCTCATCATCATAAAGTGGTGCACTGGTTCAAATGCTGATCTGTATCACGTAATGATATACATGTTTCTGGGCCCTACTGGTGATCTGGCTGAAAACCAACTTTTTCCTGGGCAGAAAAATGTTCAGATTGTGCTGCTCTTACTTGCCCTTGTTGCTGTGCCATGGATGCTGCTTCCGAAGCCTTTTCTTTTGAAGAGACAACACGAACAGAGGTTCCAAGGCCAATCTTATGCGCCCCTTCCAAGTGCTGATGATTCCCTCGAGTTGGATTCACATCATGATTCACATGGTCATGAGGAGTTTGAGTTCAGTGAGGTTTTTGTTCATCAACTTATACATACGATTGAATTTGTGCTTGGAGCAGTGTCAAATACAGCTTCCTATCTTCGTCTATGGGCTTTAAGTCTTGCGCACTCAGAGTTGTCAAGTGTGTTTTACGACAAGGTTCTTGTTCTATCTGCGGGGTTCAACAACATTATAATCTTGATAGTAGGCATTATCGTTTTCATTTTCGCTACCATTGGCGTGTTGCTGCTGATGGAGACTTTAAGTGCCTTCCTTCATGCACTGCGTCTTCATTGGGTCGAGTTCCAAAACAAGTTCTACGAGGGAGACGGGTACAAATTCCATCCTTTCTCATTTGCATTGCTAGATGAAGATGATGAATGA 2457 43.51 MGDTRGGCCPSMDLFRSEPMQLVQLIIPIESAHRTISYLGDLGLLQFKDLNADKSPFQRTYAAQIKRCGEMARKLNFFKEQMLKAGLSSKSSVSQVDINIDDLEIKLGELEAELVEINANSEKLQRSYNELVEYKLVLQKAGEFFSAAQSSAVEQQREFESRRIGGDSIEVPLLLEQESFVDQSKPVNLGFLSGLVPREKSMAFERILFRATRGNVFLKQAAVEDPVADPVSGEKVEKNVFIVFYSGERAKNKILKICEAFGANRYPFTEDLGKQAQMIAEVSGKLSELKTTIDLGLLHRGNLLQTIGEHFENWNLLARKEKSIYHILNMLSLDVTKKCLVAEGWGPVFATKQIQDALQRAAADSNSQVGPIFQVLLTTEAPPTYFRTNKFSSAFQEIVDAYGVARYQEANPGVYTIVTFPFLFAVMFGDWGHGICLFLATLYFILREKKLSSQKLGDITEMAFGGRYVILMMSLFSIYTGLIYNEFFSVPFGLFGRSAYECRSSDCSDSTTMGLIKVGSTYPFGLDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIIISYFNATFFRNSINIWFQFLPQMIFLNSLFGYLSLLIIIKWCTGSNADLYHVMIYMFLGPTGDLAENQLFPGQKNVQIVLLLLALVAVPWMLLPKPFLLKRQHEQRFQGQSYAPLPSADDSLELDSHHDSHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLVLSAGFNNIIILIVGIIVFIFATIGVLLLMETLSAFLHALRLHWVEFQNKFYEGDGYKFHPFSFALLDEDDE 818
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 4629973 4641061 + CmPI595203_02g005050.1 Cmu02g0505 408554

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0505 818 Pfam V-type ATPase 116kDa subunit family 38 810 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cmu02g0505 818 Coils Coil 93 127 - -
Cmu02g0505 818 PIRSF ATP6V0A1 10 818 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
Cmu02g0505 818 PANTHER VACUOLAR PROTON ATPASES 12 816 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0505 K02154 - - csv:101211364 1528.07
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0505 Cmu-Chr2:4629973 Cmu02g2073 Cmu-Chr2:34408659 5.40E-298 dispersed
Cmu02g0505 Cmu-Chr2:4629973 Cmu08g1402 Cmu-Chr8:26176595 0.00E+00 wgd
       

Deco-Alignment


Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g14 . . . . . Bpe12g00089 . . . . . . . . . Cpe04g00112 Cpe15g00555 . . . . . . . Cla02g00497 Cam02g0507 Cec02g0507 Cco02g0512 Clacu02g0509 Cmu02g0505 Cre02g0838 . . Cone3ag1221 Cone10ag1105 . Csa07g00020 . Cme01g01362 Blo04g00529 Blo13g00540 Bda15g01074 Bda14g00572 Bpe15g00852 . Bma03g00566 Bma08g00785 . . . . Cma19g00683 . Car19g00527 . . . . . . . . . . . . . . . . Lsi11g01128 . Chy01g00757 .
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu08g1600 . 1 998 Primary Pumps ATPases(2) AT1G10130 83.3 0.0e+00 1629.4
Cmu02g2073 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.6 0.0e+00 1345.9
Cmu08g1402 . 1 802 Primary Pumps ATPases(2) AT2G28520 63.2 4.1e-298 1020.8
Cmu02g0505 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.2e-292 1002.7
Cmu02g0505 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1233.8
Cmu08g1402 . 1 807 Primary Pumps ATPases(2) AT2G21410 73.5 0.0e+00 1195.3
Cmu02g2073 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.6 2.9e-299 1024.6
Cmu02g0505 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1235.7
Cmu08g1402 . 1 807 Primary Pumps ATPases(2) AT4G39080 74.2 0.0e+00 1192.6
Cmu02g2073 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.5 3.2e-298 1021.1
Cmu08g1392 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cmu08g1393 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cmu11g1570 . 90 227 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cmu08g1392 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cmu08g1393 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cmu11g1570 . 64 227 Primary Pumps ATPases(2) AT1G75630 80.3 3.2e-66 248.4
Cmu08g1392 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.4e-74 274.2
Cmu08g1393 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.4e-74 274.2
Cmu11g1570 . 65 227 Primary Pumps ATPases(2) AT2G16510 99.4 4.4e-74 274.2
Cmu11g1570 . 63 184 Primary Pumps ATPases(2) AT1G19910 99.2 5.4e-53 203.8
Cmu08g1392 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cmu08g1393 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cmu05g1746 . 4 180 Primary Pumps ATPases(2) AT2G25610 82.5 2.4e-70 262.3
Cmu08g1238 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.1e-70 261.9
Cmu08g1392 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.0e-60 227.6
Cmu08g1393 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.0e-60 227.6
Cmu11g1570 . 90 227 Primary Pumps ATPases(2) AT4G38920 99.3 4.0e-60 227.6
Cmu05g1746 . 11 180 Primary Pumps ATPases(2) AT4G32530 77.5 6.2e-73 270.8
Cmu08g1238 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.5e-71 266.2
Cmu03g0800 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.6 0.0e+00 1672.1
Cmu03g0800 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1671.8
Cmu08g1600 . 1 998 Primary Pumps ATPases(2) AT1G10130 83.3 0.0e+00 1629.4
Cmu03g0800 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.7 0.0e+00 1320.8
Cmu03g2322 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 3.8e-57 217.6
Cmu02g0413 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.5e-268 920.2
Cmu10g2755 . 62 169 Primary Pumps ATPases(2) AT3G01390 80.6 3.8e-37 151.0
Cmu01g0784 . 261 636 Primary Pumps ATPases(2) AT1G12840 83.0 1.0e-179 626.3
Cmu09g2120 . 1021 1281 Primary Pumps ATPases(2) AT3G58730 82.4 7.9e-118 420.2
Cmu10g2379 . 67 519 Primary Pumps ATPases(2) AT3G42050 77.7 1.9e-201 698.7
Cmu08g1392 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.4e-74 274.2
Cmu08g1393 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.4e-74 274.2
Cmu11g1570 . 65 227 Primary Pumps ATPases(2) AT2G16510 99.4 4.4e-74 274.2
Cmu02g0413 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 2.9e-270 927.5
Cmu05g1461 . 1 182 Primary Pumps ATPases(2) AT1G64200 73.0 1.7e-64 242.7
Cmu02g0413 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.4e-266 912.5
Cmu02g2073 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.6 0.0e+00 1345.9
Cmu08g1402 . 1 802 Primary Pumps ATPases(2) AT2G28520 63.2 4.1e-298 1020.8
Cmu02g0505 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.2e-292 1002.7
Cmu10g2246 . 102 443 Primary Pumps ATPases(2) AT3G28715 92.7 2.8e-187 651.4
Cmu05g1461 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.0 2.8e-90 328.6
Cmu09g0160 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.3 0.0e+00 1171.4
Cmu02g0413 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.5e-268 920.2
Cmu02g0413 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 2.9e-270 927.5
Cmu02g0413 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.4e-266 912.5
Cmu01g0784 . 261 636 Primary Pumps ATPases(2) AT1G12840 83.0 1.0e-179 626.3
Cmu09g2120 . 1021 1281 Primary Pumps ATPases(2) AT3G58730 82.4 7.9e-118 420.2
Cmu05g1461 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.0 2.8e-90 328.6
Cmu05g1461 . 1 223 Primary Pumps ATPases(2) AT3G08560 68.6 8.8e-76 280.4
Cmu05g1461 . 1 182 Primary Pumps ATPases(2) AT1G64200 73.0 1.7e-64 242.7
Cmu03g2322 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 3.8e-57 217.6
Cmu10g2755 . 62 169 Primary Pumps ATPases(2) AT3G01390 80.6 3.8e-37 151.0
Cmu10g2379 . 67 519 Primary Pumps ATPases(2) AT3G42050 77.7 1.9e-201 698.7
Cmu02g2073 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.6 0.0e+00 1345.9
Cmu08g1402 . 1 802 Primary Pumps ATPases(2) AT2G28520 63.2 4.1e-298 1020.8
Cmu02g0505 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.2e-292 1002.7
Cmu02g0505 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1233.8
Cmu08g1402 . 1 807 Primary Pumps ATPases(2) AT2G21410 73.5 0.0e+00 1195.3
Cmu02g2073 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.6 2.9e-299 1024.6
Cmu02g0505 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1235.7
Cmu08g1402 . 1 807 Primary Pumps ATPases(2) AT4G39080 74.2 0.0e+00 1192.6
Cmu02g2073 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.5 3.2e-298 1021.1
Cmu08g1392 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cmu08g1393 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cmu11g1570 . 90 227 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cmu11g1570 . 63 184 Primary Pumps ATPases(2) AT1G19910 99.2 5.4e-53 203.8
Cmu08g1392 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cmu08g1393 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cmu08g1392 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.0e-60 227.6
Cmu08g1393 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.0e-60 227.6
Cmu11g1570 . 90 227 Primary Pumps ATPases(2) AT4G38920 99.3 4.0e-60 227.6
Cmu08g1392 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cmu08g1393 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cmu11g1570 . 64 227 Primary Pumps ATPases(2) AT1G75630 80.3 3.2e-66 248.4
Cmu08g1392 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.4e-74 274.2
Cmu08g1393 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.4e-74 274.2
Cmu11g1570 . 65 227 Primary Pumps ATPases(2) AT2G16510 99.4 4.4e-74 274.2
Cmu05g1746 . 11 180 Primary Pumps ATPases(2) AT4G32530 77.5 6.2e-73 270.8
Cmu08g1238 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.5e-71 266.2
Cmu05g1746 . 4 180 Primary Pumps ATPases(2) AT2G25610 82.5 2.4e-70 262.3
Cmu08g1238 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.1e-70 261.9
Cmu10g2246 . 102 443 Primary Pumps ATPases(2) AT3G28710 95.0 2.4e-194 674.9
Cmu10g2246 . 102 443 Primary Pumps ATPases(2) AT3G28715 92.7 2.8e-187 651.4
Cmu03g0800 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.6 0.0e+00 1672.1
Cmu03g0800 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.7 0.0e+00 1320.8
Cmu08g1600 . 1 998 Primary Pumps ATPases(2) AT1G10130 83.3 0.0e+00 1629.4
Cmu03g0800 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1671.8
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000455 4 5 5 3 4 3 5 3 3 3 3 3 6 3 3 5 3 6 6 3 3 3 3 3 3 3 3 7 4 4 115