Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0508 ATGTGCCTTCCAGAACCAGGGGTCTTCGAGCCTGCTGCAAAGCTTTCAAGCAGCCATATGGGGAAGAACAAGAAACATAAGGACGGCGGCGAGAAGGGAGCCGCCGCCGGCGACCACTGCCCTTCCAAGGTCTTCGTCAAGAACTTGCCGTACTCGTTCACCAACTCACAGCTTGAAGAAACATTCAGTGATGTTGGTCCGGTCCGGCGGTGCTTCATGGTTACTCAAAAGGGTTCAACTGAGCATTGCGGTTTTGGATTCGTGCAGTTTGCTGTAGCTGAAGATGCAAATCGAGCAATTGAGCTGAAGAATGGGATGTCTGTTGAAGGACGCAAAATTACTGTTAAACATGCTATGCATCGAGCTCCCCTTGAGCAGCGGCGGTCTAAAGAAAATCAAGCTACTGCATCTAAGTCAACAATTAACGAGGAAGGAGATACTTCTAAAAGGGAAGAGCAAACAATTAACGAGGATAGAGATACTTCTAAAAGGGAAGAACAAACAACTAATGAGGATAGAGATACTTCTGAAAAGGCAGAACAAACAACTTCAAATTCCGAGGGGAAAGAGAGACATTTGAATGCTCGGAAATTAGCTTCACTTTCTAGTTATCTAGAGGATAAAGAGGGTCATTCAGGAAAGCAAAGGATTGCCAGGACTGTTGTATTCGGTGGTCTTCTTAATGCTGACATGGCTGAAGATGTTCACCGCCAAGCAAGAGATGTTGGCGACATATGCTCTATTGTTTATCCTCTTCCCAGAAAAGAAGTTGAACAACATGGTCTTTTACGAGATGGATGCAAAATGGATGTTTCAGCTGTACTTTTTGCTAGTGTGAAGTCTGCACGTGCTGCTGTTACCATATTACACCAGAAAGAGATGAAAGGAGGTGTTGTATGGGCCCGACAACTGGGTGGAGAGCTTTTAAATATTGGAAGAAGTGACCTCCTGATCGGCTATAAGATTGTGGAGGACAGATTTGCGTTCACTGGAAGATCCAAGTTCCGTCTTTTGTTGTCCCTTATGGAACTTGGTCCAAAGGGGTCCAAAACTCAGAAATGGAAAGTTATTGTTAGAAATCTTCCATTTAAGGCCAAGGAGAAAGAAATAAAGGATACCTTTTCATCTGCAGGATTTGTGTGGGATGTGATGATGCCACATAGTTCAGACACAGGATTATCAAAGGGGTTTGCGTTTGTCAAATTTACATGCAAACAGGATGCTGAGAGTGCTATTAAAAAGTTCAATGGTCAAAAATTTGGTCAAAGGACGATAGCTGTGGACTGGGCTGTTCCAAAGAAGATATATAGCTCGGGTGCTAGTGCTCCAGTTGATTCAGATGACGGGGAACAGACTGAAAGAGACAGAGAAGGTAGCATTAGTAGTGATGATTTCGAAGCTGAAAATACTGCTGTTCATGAGAAATCTCAGTGCTCCAACAAAGATGAAAGTTCTTCAGAGGATTCGGAGAAAGAAGATATTTCCTCGGAGGTTAATTTTGAAGGAGAAGCAGAAATGGCAAGAAAAGTTCTTGAAAATCTAATTTCATCTTCGGCTAAAGAGGCTCTTCCTTCTCCCATTGATGGTAACCCACCATCTAAAGTGAACAAGGAGCCAGATTTTGATTCGTCCAAGAAGTCATCTGATGTGTCTGATAAAGTATCAAATGAACCTGGAAAGTTAAATGAAAGCAAAACATCTATTCTTAAGCAAACAGATGAAGATGATTTGAAGAGAACTGTTTATATAGGCAATCTTCCTTTTGATATTGATAATGAAGAAGTGAAACAGCGGTTTTCTGGATTTGGTGAAGTGCTATCCTTTGTGCCAGTCCTTCATCAGGTTACAAAGCGACCTAAAGGCACTGGTTTTCTCAAGTTTAAAACGGTCAATGCTGCTACTGCTGCTGTTTCTTCTGCAAATGTTGCATCTGGTGTGGGAATATTTCTGAAAGGCAGGCAACTGAAAGTATTGAATGCCCTGGATAGAAAATCAGCTCATGACAAGGAATTGGAAAAGTCCAAAAATGACAATCATGACCACCGGAATCTTTATCTTGCACAGGAAGGTATTATTCTCGAGGGAACTCCAGCTGCTGAGGGAGTTTCTGCTAGTGATATGGAGAAACGTCAAAGGCTGGAAAAGAAAAGAACGACCAAGCTTCAATCTCCAAATTTTCATGTTTCAAGGACTAGGCTCGTTATACACAATTTACCAAAATCAATGAAAGAAAAAGAACTTCAAAAACTTTGCATTGAAGCAGTTACCTCACGAGCTACAAAACAAAAACCCGTGATTCGACAGATTAAGTTCTTAAAGGATGTGAAGAAAGGAAAGCTACTGACAAAAAATCACTCCTGTGGAGTCGCTTTCGTTGAGTTTTCTGAGCATGAGCACGCCCTTGTAGCCCTGCGAGTTCTCAACAACAATCCAGAAACTTTTGGCCCTATAAATCGCCCGATCGTAGAGTTTGCTATTGACAATGTTCAAACGTTGAAGTTGCGTAAAGCAAAGTTACAAGCTTGGTCACAGGACAATACAGCCAATGTTCCCAAAGCCTGGCAAGGGAATGCGAATACTGATACAATTGCTGGGGATGTCCATTCAAACAAGAACAATTCCAGAAAAAGGAAAGCAATGGGTGATAATCGTCCGGTGCGCAACAAAGATGAAAATGACAATCATGTGTCCAATGATGTGGCGATGGAAGAAAATAGAGCTATAAAAAAGAGGAAAACACGTCCAGAAATCGGTAATACAAACAAGTCGCTGAGACAAAAACCAGAAGGACGAAGATCAATGCCTGAAAAATCGATCAACAGATCGGTATCCATGGATTCTGGAAAAATAAAAGCTTCTCAGGAAGCTGATGTACAACACAAAAAGAAGGTAAAACATCAAGTAGAGCAGCAGAGGAAGAGGCCAAAGAAAAACAAGGAACCAATAGGGCGGGATGTTGTCGATAAACTCGACGTGCTTATTGAACAATATCGATCCAAGTTCTTGCAGCAGAGGTCAGACCGAACAGATGGTGAAAAGAAAGGCTCTAAACAGGGCTCCCTTTTGATGGCCAAACCCAAGGCTCCGAGGCAAACCCTAGATTCTTACACTGTCAAACGCATCAACAAAACCATTAAAGCCGGCGATTGCGTGCTTATGAGGCCCTCCGAACCCTCGAAACCTTCGTATGTTGCTAAGATTGAGAAGATTGAGGCTGATTCTCGTGGGGCCAATGTGAAGGTCCATGTTCGCTGGTATTACCGGCCGGAGGAATCAATTGGCGGTCGGAGACAGTTTCATGGCTCGAAGGAGCTGTTTCTCTCCGACCATTATGACGTTCAAAGCGCCGACACTATCGAGGGAAAGTGTACGGTGCATACGTTTAAGAATTATACCAAGCTTGATGCCGTTGGAAATGATGATTATTTTTGCCGTTTCGACTATAATTCCACTACTGGAGCTTTCAATCCCGATCGAGTGGCTGTGTATTGCAAGTGTGAGATGCCTTATAATCCCGATGACCTAATGGTTCAGTGCGAGAGCTGCAGTGACTGGTTCCATCCTGCTTGTATAGAAATGACTGCAGAAGAAGCTAAAAAACTTGACCACTTCTTCTGTGAAAGTTGTTCTTCAGAGGGTCAAAAGAAGTTGCAGAATTCACAGGCTACATCTAAAGTTGCAGAGACTAAGGTGGATACAAAACGACGCCGGAGGTGA 3717 42.91 MCLPEPGVFEPAAKLSSSHMGKNKKHKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHCGFGFVQFAVAEDANRAIELKNGMSVEGRKITVKHAMHRAPLEQRRSKENQATASKSTINEEGDTSKREEQTINEDRDTSKREEQTTNEDRDTSEKAEQTTSNSEGKERHLNARKLASLSSYLEDKEGHSGKQRIARTVVFGGLLNADMAEDVHRQARDVGDICSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMKGGVVWARQLGGELLNIGRSDLLIGYKIVEDRFAFTGRSKFRLLLSLMELGPKGSKTQKWKVIVRNLPFKAKEKEIKDTFSSAGFVWDVMMPHSSDTGLSKGFAFVKFTCKQDAESAIKKFNGQKFGQRTIAVDWAVPKKIYSSGASAPVDSDDGEQTERDREGSISSDDFEAENTAVHEKSQCSNKDESSSEDSEKEDISSEVNFEGEAEMARKVLENLISSSAKEALPSPIDGNPPSKVNKEPDFDSSKKSSDVSDKVSNEPGKLNESKTSILKQTDEDDLKRTVYIGNLPFDIDNEEVKQRFSGFGEVLSFVPVLHQVTKRPKGTGFLKFKTVNAATAAVSSANVASGVGIFLKGRQLKVLNALDRKSAHDKELEKSKNDNHDHRNLYLAQEGIILEGTPAAEGVSASDMEKRQRLEKKRTTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKPVIRQIKFLKDVKKGKLLTKNHSCGVAFVEFSEHEHALVALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWSQDNTANVPKAWQGNANTDTIAGDVHSNKNNSRKRKAMGDNRPVRNKDENDNHVSNDVAMEENRAIKKRKTRPEIGNTNKSLRQKPEGRRSMPEKSINRSVSMDSGKIKASQEADVQHKKKVKHQVEQQRKRPKKNKEPIGRDVVDKLDVLIEQYRSKFLQQRSDRTDGEKKGSKQGSLLMAKPKAPRQTLDSYTVKRINKTIKAGDCVLMRPSEPSKPSYVAKIEKIEADSRGANVKVHVRWYYRPEESIGGRRQFHGSKELFLSDHYDVQSADTIEGKCTVHTFKNYTKLDAVGNDDYFCRFDYNSTTGAFNPDRVAVYCKCEMPYNPDDLMVQCESCSDWFHPACIEMTAEEAKKLDHFFCESCSSEGQKKLQNSQATSKVAETKVDTKRRRR 1238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4661100 4683569 - CmPI595203_02g005080.1 Cmu02g0508 408557

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0508 1238 MobiDBLite consensus disorder prediction 119 194 - -
Cmu02g0508 1238 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723(InterPro)
Cmu02g0508 1238 Pfam BAH domain 1044 1157 IPR001025 GO:0003682(InterPro)
Cmu02g0508 1238 CDD BAH_BAHCC1 1044 1179 - -
Cmu02g0508 1238 Pfam RNA recognition motif 44 114 IPR000504 GO:0003723(InterPro)
Cmu02g0508 1238 Pfam RNA recognition motif 356 425 IPR000504 GO:0003723(InterPro)
Cmu02g0508 1238 Pfam RNA recognition motif 581 641 IPR000504 GO:0003723(InterPro)
Cmu02g0508 1238 MobiDBLite consensus disorder prediction 1213 1238 - -
Cmu02g0508 1238 MobiDBLite consensus disorder prediction 438 500 - -
Cmu02g0508 1238 SMART rrm1_1 732 823 IPR000504 GO:0003723(InterPro)
Cmu02g0508 1238 SMART rrm1_1 580 658 IPR000504 GO:0003723(InterPro)
Cmu02g0508 1238 SMART rrm1_1 43 116 IPR000504 GO:0003723(InterPro)
Cmu02g0508 1238 SMART rrm1_1 355 428 IPR000504 GO:0003723(InterPro)
Cmu02g0508 1238 MobiDBLite consensus disorder prediction 1003 1032 - -
Cmu02g0508 1238 MobiDBLite consensus disorder prediction 447 500 - -
Cmu02g0508 1238 Pfam PHD-finger 1164 1209 IPR019787 -
Cmu02g0508 1238 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 354 432 IPR000504 GO:0003723(InterPro)
Cmu02g0508 1238 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 731 839 IPR000504 GO:0003723(InterPro)
Cmu02g0508 1238 ProSiteProfiles BAH domain profile. 1043 1159 IPR001025 GO:0003682(InterPro)
Cmu02g0508 1238 MobiDBLite consensus disorder prediction 870 918 - -
Cmu02g0508 1238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1156 1227 IPR013083 -
Cmu02g0508 1238 Gene3D - 730 825 IPR012677 -
Cmu02g0508 1238 ProSiteProfiles Zinc finger PHD-type profile. 1161 1212 IPR019787 -
Cmu02g0508 1238 MobiDBLite consensus disorder prediction 850 984 - -
Cmu02g0508 1238 SUPERFAMILY RNA-binding domain, RBD 42 300 IPR035979 GO:0003676(InterPro)
Cmu02g0508 1238 ProSitePatterns Zinc finger PHD-type signature. 1164 1209 IPR019786 -
Cmu02g0508 1238 SUPERFAMILY FYVE/PHD zinc finger 1153 1215 IPR011011 -
Cmu02g0508 1238 PANTHER RNA-BINDING MOTIF PROTEIN 14B 39 1018 IPR051945 GO:0003729(PANTHER)
Cmu02g0508 1238 SUPERFAMILY RNA-binding domain, RBD 579 809 IPR035979 GO:0003676(InterPro)
Cmu02g0508 1238 MobiDBLite consensus disorder prediction 538 559 - -
Cmu02g0508 1238 CDD RRM4_RBM28_like 731 828 - -
Cmu02g0508 1238 CDD RRM1_RBM28_like 43 121 - -
Cmu02g0508 1238 Gene3D - 344 477 IPR012677 -
Cmu02g0508 1238 MobiDBLite consensus disorder prediction 850 869 - -
Cmu02g0508 1238 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 579 662 IPR000504 GO:0003723(InterPro)
Cmu02g0508 1238 MobiDBLite consensus disorder prediction 521 565 - -
Cmu02g0508 1238 FunFam RNA-binding motif protein 28 730 825 - -
Cmu02g0508 1238 SMART BAH_4 1043 1159 IPR001025 GO:0003682(InterPro)
Cmu02g0508 1238 SMART PHD_3 1163 1210 IPR001965 -
Cmu02g0508 1238 MobiDBLite consensus disorder prediction 1213 1227 - -
Cmu02g0508 1238 MobiDBLite consensus disorder prediction 143 194 - -
Cmu02g0508 1238 SUPERFAMILY RNA-binding domain, RBD 349 444 IPR035979 GO:0003676(InterPro)
Cmu02g0508 1238 MobiDBLite consensus disorder prediction 13 37 - -
Cmu02g0508 1238 CDD RRM2_RBM28_like 355 431 - -
Cmu02g0508 1238 Gene3D - 1005 1155 IPR043151 -
Cmu02g0508 1238 Gene3D - 10 134 IPR012677 -
Cmu02g0508 1238 Gene3D - 525 676 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0508 K14573 - - csv:101217384 1553.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0222 Cmu-Chr2:2104509 Cmu02g0508 Cmu-Chr2:4661100 2.10E-81 dispersed
Cmu02g0508 Cmu-Chr2:4661100 Cmu10g2552 Cmu-Chr10:32265681 6.30E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g8 . . . . . Bpe12g00087 . . Cmo19g00694 . . . . . Sed05g2305 Cpe04g00115 Cpe15g00553 Bhi05g01787 Tan02g0774 Cmetu01g1478 . Hepe02g0245 . . Cla02g00500 Cam02g0510 Cec02g0510 Cco02g0517 Clacu02g0512 Cmu02g0508 Cre02g0841 Cone12ag1172 Cone8ag1219 . . . Csa07g00017 . Cme01g01365 Blo04g00526 Blo13g00542 Bda15g01076 Bda14g00569 Bpe15g00854 . Bma03g00563 Bma08g00787 . . . . . . Car19g00525 . . . . . . . . . . . . . . . . Lsi11g01125 . Chy01g00760 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009278 1 1 1 3 1 1 1 1 1 1 1 1 0 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5701 PF01426 BAH 8.60E-22 No_clan Cmu TR