Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0518 ATGAACAGAGCATTACCGGAGATGTTGCATTGTTTGAACACTACCGGGAACTGTCCTGATACTCTCAGTGTTCTTGAGAGGCAGAGAGCTCGTTTGAAATGGCAGCAAGATCAGCTTTTGCAGCAGCAACAGCAGCCATTGAATCAGAGCTGTTTCAATAAGGTTGACTACGGCGGTGGATTTCCGCCGCCGGTGGCTGTTCCAGCGGATCACTTCACGGGGTTTCCTGGGTACATGAATGGCGGCGGCGGTGGTGGAGGTGGTGGGTTGTCACTTGTTGAGATGGTAATGGGGGCAGTGAAGTCTGACCCTGGGTTGAATGATGGGTGGTCTGAAATGGGAAAGTTTGATCCTTCTTTGTTGTTGAATGCCACCGCTTATGAGCTCAATTCTTCTCTCTCTAGAACCTCCAGCTGCCCGCCGGCGGTGGCTCCGACGGTGGCGGAGAAGATGGGGTCGGCGGCTGGAAGAGATAGCTTCAAGAAAAGGAAAGCTGAGAAAGTTCACAACACTACTACCACCACCACCAACAACAACAACAATAGCAAGGTGACTGTGGAAGAAGATAACATCAGCAGCAGCAAGGAGAAGAGGATCAAAGCAAGTTCAGAAGAAGGAGAATTATCCAAAACCACAGATCAAAACAGTACCAAAAACAACTCAACCACCACAACCACAACAAACAATAACAGAGAAACTTCAGCTGATACCTCAAAAGAAAACTCCAAAGCTTCAGAGGTTCAAAAGCCTGATTACATTCATGTCAGAGCTCGCCGTGGCCAAGCTACTGATAGCCATAGCTTAGCTGAAAGAGCTAGAAGGGAAAAAATCAGTGAGAGAATGAAGTACTTGCAAGATTTAGTACCAGGATGCAACAAAATCACTGGAAAAGCTGGAATGCTCGACGAGATCATAAACTATGTCCAATCTCTTCAAAGACAAGTTGAGTTCTTGTCCATGAAGTTAGCTGCTGTTAATCCAAGGTTGGACTTCAATGTCGATGATCTCTTCAACAAAGAGGTTTTCCCCCCATCTTGCACCACCGCGAACTTCCCGACGATCGGCGGAATGTCATCGGAGATGACAGATCCTTCTTCCTACTTACAATTCAATCCAAATAATCAACAAATGGTCTCGTGTTGTGGATTAGAAATGGGAATCAATACCTCCGATGCCGCGGCTCTTCGAAGAACAATCAGCGCCCCTGTTTCTTTCCCGGAAACTTTCCTCGATTCATCTTGCCTCACCCAATTTCAACCCTCTTCAGGGTGGGATGTGGATTTGCAGAATCTGTACAATGTGGGTTTCGATCAAGGAAGATCATCAAACGCCTTTTCATCTCAACCATATACAGGTTCAATTGAAGGAGGCATTATAAAGATGGAAATGTGA 1392 46.41 MNRALPEMLHCLNTTGNCPDTLSVLERQRARLKWQQDQLLQQQQQPLNQSCFNKVDYGGGFPPPVAVPADHFTGFPGYMNGGGGGGGGGLSLVEMVMGAVKSDPGLNDGWSEMGKFDPSLLLNATAYELNSSLSRTSSCPPAVAPTVAEKMGSAAGRDSFKKRKAEKVHNTTTTTTNNNNNSKVTVEEDNISSSKEKRIKASSEEGELSKTTDQNSTKNNSTTTTTTNNNRETSADTSKENSKASEVQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNVDDLFNKEVFPPSCTTANFPTIGGMSSEMTDPSSYLQFNPNNQQMVSCCGLEMGINTSDAAALRRTISAPVSFPETFLDSSCLTQFQPSSGWDVDLQNLYNVGFDQGRSSNAFSSQPYTGSIEGGIIKMEM 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4806900 4809695 - CmPI595203_02g005180.1 Cmu02g0518 408567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0518 463 MobiDBLite consensus disorder prediction 236 250 - -
Cmu02g0518 463 Gene3D - 258 332 IPR036638 GO:0046983(InterPro)
Cmu02g0518 463 Pfam Helix-loop-helix DNA-binding domain 265 312 IPR011598 GO:0046983(InterPro)
Cmu02g0518 463 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 261 311 IPR011598 GO:0046983(InterPro)
Cmu02g0518 463 MobiDBLite consensus disorder prediction 148 250 - -
Cmu02g0518 463 FunFam Basic helix-loop-helix transcription factor 258 330 - -
Cmu02g0518 463 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 259 330 IPR036638 GO:0046983(InterPro)
Cmu02g0518 463 SMART finulus 267 317 IPR011598 GO:0046983(InterPro)
Cmu02g0518 463 MobiDBLite consensus disorder prediction 189 207 - -
Cmu02g0518 463 CDD bHLH_AtBPE_like 251 336 - -
Cmu02g0518 463 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 152 378 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cmu02g0518 463 Coils Coil 22 45 - -
Cmu02g0518 463 MobiDBLite consensus disorder prediction 155 169 - -
Cmu02g0518 463 MobiDBLite consensus disorder prediction 208 235 - -
Cmu02g0518 463 MobiDBLite consensus disorder prediction 170 188 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0518 Cmu-Chr2:4806900 Cmu06g1866 Cmu-Chr6:29453668 5.30E-32 dispersed
Cmu01g0705 Cmu-Chr1:7900813 Cmu02g0518 Cmu-Chr2:4806900 1.30E-42 transposed
Cmu05g0793 Cmu-Chr5:7021989 Cmu02g0518 Cmu-Chr2:4806900 6.20E-40 transposed
Cmu05g2393 Cmu-Chr5:33161783 Cmu02g0518 Cmu-Chr2:4806900 6.50E-39 transposed
Cmu05g2702 Cmu-Chr5:35517306 Cmu02g0518 Cmu-Chr2:4806900 7.40E-36 transposed
Cmu06g1706 Cmu-Chr6:28079906 Cmu02g0518 Cmu-Chr2:4806900 9.70E-34 transposed
Cmu08g0851 Cmu-Chr8:20801322 Cmu02g0518 Cmu-Chr2:4806900 3.60E-34 transposed
Cmu08g1611 Cmu-Chr8:27789836 Cmu02g0518 Cmu-Chr2:4806900 1.10E-29 transposed
Cmu09g0819 Cmu-Chr9:7926626 Cmu02g0518 Cmu-Chr2:4806900 1.50E-37 transposed
Cmu10g2465 Cmu-Chr10:31251455 Cmu02g0518 Cmu-Chr2:4806900 1.40E-35 transposed
Cmu11g0442 Cmu-Chr11:4854418 Cmu02g0518 Cmu-Chr2:4806900 4.20E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5702 PF00010 HLH 1.30E-06 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0518 - - - 0.0