Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0539 ATGGCGGTTTCCGGTAGCAATTCGACCCAGATTCACCCTTCCGACGAATCTCCCTCCAGTTCTTCCAAAACTTCGCTATCAAACTTGAAAATCTACGCTGCGATCGGTATAATAGCTGCATGTGTGATTGCCGCCTCTGCTCTGATCTTCCTCTGTATCCGTAGAAGTAGAGACTCGAGGAAGCACAAAATGCGGGTGAAACATAGTTCTGGATTGATTCCATTGGTTTCCAAGGAGATCGCTGAGATTAAAGAGCCCGATCGGACTGCAGATTGCGAGAAAGGGGAAGTCGTTAGGGTTGAGAATAAGAAGGAGATTGAGTTCGAGAATGGAGTAGGTAAGAAGAGTCAAGAGAGCGACGTGTCCGGCGGTGGTCGAAGCGACGTGTCGGTGGAGGATCCGAACTTAGGGTGGGGACGGTGGTACAGCTTGAAGGAACTGGAAATAGCGACTGATGGGTTTCTTGAAGAGAATGTGATCGGAGAAGGAGGCTACGGCATCGTGTACAGAGGAGTTTCACCGGACGGCTCCGTCGTCGCCGTGAAGAATCTTCTTAACAATAAGGGTCAAGCAGAGAAAGAGTTCAAGGTTGAAGTAGAGGCTATTGGAAAAGTGAGGCACAAGAACTTGGTGGGTCTGATAGGTTATTGTGCAGATGGAGCACAGAGGATGCTTGTGTATGAATTTATTGATAATGGCAACTTGGAGCAATGGTTACATGGTGATGTAGGGCCTGTTAGTCCTCTAACATGGGATATTAGGATGAAGATTGCTCTTGGAACGGCAAAGGGTTTGGCCTATTTGCATGAGGGTTTAGAGCCTAAAGTTGTTCACCGTGATATAAAGTCCAGCAACATTCTCTTAGATAGAAAATGGAATGCAAAAGTGTCAGATTTTGGACTTGCAAAGCTCTTACAACCCGAAGCCAGCTATGTAACTACTCGTGTAATGGGTACCTTTGGATATGTCTCCCCGGAGTATGCAAGCACAGGCATGCTTAATGAGGGGAGCGATGTATACAGTTTCGGTGTTCTACTTATGGAGATCATCACTGGCAGAAGCCCGATTGACTATTCCAGGCCCCCAGGAGAGATGAACTTGGTGGACTGGTTTAAAGGAATGGTGGCAAATCGACGTGGGGAAGAGGTCGTAGATCCGTTGATTGAGATTCCACCCTCTCCAAGAACTCTAAAGAGAGTGTTGCTTGTTTGTCTACGCTGCATTGATTTGGATGCCAATAAAAGGCCAAAGATGGGGCAAATTGTTCATATGCTAGAGGCAGATGATTTTCCTTATCGTTCAGAGCTTCGATCTGTTCGAGAGAAAGATAACCAGCCTGCTCGTTTAGACGTGCCGAGTAAACTTCCATTGAAGCATGCTGGAATAGATGACACGGAATCAAGAAAGAGATAA 1413 46.57 MAVSGSNSTQIHPSDESPSSSSKTSLSNLKIYAAIGIIAACVIAASALIFLCIRRSRDSRKHKMRVKHSSGLIPLVSKEIAEIKEPDRTADCEKGEVVRVENKKEIEFENGVGKKSQESDVSGGGRSDVSVEDPNLGWGRWYSLKELEIATDGFLEENVIGEGGYGIVYRGVSPDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLIGYCADGAQRMLVYEFIDNGNLEQWLHGDVGPVSPLTWDIRMKIALGTAKGLAYLHEGLEPKVVHRDIKSSNILLDRKWNAKVSDFGLAKLLQPEASYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKGMVANRRGEEVVDPLIEIPPSPRTLKRVLLVCLRCIDLDANKRPKMGQIVHMLEADDFPYRSELRSVREKDNQPARLDVPSKLPLKHAGIDDTESRKR 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5082001 5085637 + CmPI595203_02g005390.1 Cmu02g0539 408588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0539 470 SMART serkin_6 154 425 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g0539 470 MobiDBLite consensus disorder prediction 438 470 - -
Cmu02g0539 470 MobiDBLite consensus disorder prediction 1 24 - -
Cmu02g0539 470 ProSitePatterns Protein kinases ATP-binding region signature. 160 182 IPR017441 GO:0005524(InterPro)
Cmu02g0539 470 FunFam Probable serine/threonine-protein kinase At1g01540 134 229 - -
Cmu02g0539 470 Pfam Protein tyrosine and serine/threonine kinase 158 425 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu02g0539 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu02g0539 470 Gene3D Transferase(Phosphotransferase) domain 1 230 439 - -
Cmu02g0539 470 PANTHER OS01G0323000 PROTEIN 20 445 IPR052232 -
Cmu02g0539 470 FunFam Putative receptor-like serine/threonine-protein kinase 230 440 - -
Cmu02g0539 470 ProSiteProfiles Protein kinase domain profile. 154 433 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g0539 470 CDD STKc_IRAK 160 426 - -
Cmu02g0539 470 SUPERFAMILY Protein kinase-like (PK-like) 130 426 IPR011009 -
Cmu02g0539 470 Gene3D Phosphorylase Kinase; domain 1 129 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0539 Cmu-Chr2:5082001 Cmu08g1542 Cmu-Chr8:27273886 7.00E-141 dispersed
Cmu02g0539 Cmu-Chr2:5082001 Cmu05g0152 Cmu-Chr5:1349206 2.40E-141 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75289 PF00069 Pkinase 3.50E-45 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0539 - - - 0.0