Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu02g0539 | ATGGCGGTTTCCGGTAGCAATTCGACCCAGATTCACCCTTCCGACGAATCTCCCTCCAGTTCTTCCAAAACTTCGCTATCAAACTTGAAAATCTACGCTGCGATCGGTATAATAGCTGCATGTGTGATTGCCGCCTCTGCTCTGATCTTCCTCTGTATCCGTAGAAGTAGAGACTCGAGGAAGCACAAAATGCGGGTGAAACATAGTTCTGGATTGATTCCATTGGTTTCCAAGGAGATCGCTGAGATTAAAGAGCCCGATCGGACTGCAGATTGCGAGAAAGGGGAAGTCGTTAGGGTTGAGAATAAGAAGGAGATTGAGTTCGAGAATGGAGTAGGTAAGAAGAGTCAAGAGAGCGACGTGTCCGGCGGTGGTCGAAGCGACGTGTCGGTGGAGGATCCGAACTTAGGGTGGGGACGGTGGTACAGCTTGAAGGAACTGGAAATAGCGACTGATGGGTTTCTTGAAGAGAATGTGATCGGAGAAGGAGGCTACGGCATCGTGTACAGAGGAGTTTCACCGGACGGCTCCGTCGTCGCCGTGAAGAATCTTCTTAACAATAAGGGTCAAGCAGAGAAAGAGTTCAAGGTTGAAGTAGAGGCTATTGGAAAAGTGAGGCACAAGAACTTGGTGGGTCTGATAGGTTATTGTGCAGATGGAGCACAGAGGATGCTTGTGTATGAATTTATTGATAATGGCAACTTGGAGCAATGGTTACATGGTGATGTAGGGCCTGTTAGTCCTCTAACATGGGATATTAGGATGAAGATTGCTCTTGGAACGGCAAAGGGTTTGGCCTATTTGCATGAGGGTTTAGAGCCTAAAGTTGTTCACCGTGATATAAAGTCCAGCAACATTCTCTTAGATAGAAAATGGAATGCAAAAGTGTCAGATTTTGGACTTGCAAAGCTCTTACAACCCGAAGCCAGCTATGTAACTACTCGTGTAATGGGTACCTTTGGATATGTCTCCCCGGAGTATGCAAGCACAGGCATGCTTAATGAGGGGAGCGATGTATACAGTTTCGGTGTTCTACTTATGGAGATCATCACTGGCAGAAGCCCGATTGACTATTCCAGGCCCCCAGGAGAGATGAACTTGGTGGACTGGTTTAAAGGAATGGTGGCAAATCGACGTGGGGAAGAGGTCGTAGATCCGTTGATTGAGATTCCACCCTCTCCAAGAACTCTAAAGAGAGTGTTGCTTGTTTGTCTACGCTGCATTGATTTGGATGCCAATAAAAGGCCAAAGATGGGGCAAATTGTTCATATGCTAGAGGCAGATGATTTTCCTTATCGTTCAGAGCTTCGATCTGTTCGAGAGAAAGATAACCAGCCTGCTCGTTTAGACGTGCCGAGTAAACTTCCATTGAAGCATGCTGGAATAGATGACACGGAATCAAGAAAGAGATAA | 1413 | 46.57 | MAVSGSNSTQIHPSDESPSSSSKTSLSNLKIYAAIGIIAACVIAASALIFLCIRRSRDSRKHKMRVKHSSGLIPLVSKEIAEIKEPDRTADCEKGEVVRVENKKEIEFENGVGKKSQESDVSGGGRSDVSVEDPNLGWGRWYSLKELEIATDGFLEENVIGEGGYGIVYRGVSPDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLIGYCADGAQRMLVYEFIDNGNLEQWLHGDVGPVSPLTWDIRMKIALGTAKGLAYLHEGLEPKVVHRDIKSSNILLDRKWNAKVSDFGLAKLLQPEASYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKGMVANRRGEEVVDPLIEIPPSPRTLKRVLLVCLRCIDLDANKRPKMGQIVHMLEADDFPYRSELRSVREKDNQPARLDVPSKLPLKHAGIDDTESRKR | 470 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 5082001 | 5085637 | + | CmPI595203_02g005390.1 | Cmu02g0539 | 408588 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu02g0539 | 470 | SMART | serkin_6 | 154 | 425 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu02g0539 | 470 | MobiDBLite | consensus disorder prediction | 438 | 470 | - | - | |
Cmu02g0539 | 470 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cmu02g0539 | 470 | ProSitePatterns | Protein kinases ATP-binding region signature. | 160 | 182 | IPR017441 | GO:0005524(InterPro) | |
Cmu02g0539 | 470 | FunFam | Probable serine/threonine-protein kinase At1g01540 | 134 | 229 | - | - | |
Cmu02g0539 | 470 | Pfam | Protein tyrosine and serine/threonine kinase | 158 | 425 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu02g0539 | 470 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 276 | 288 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu02g0539 | 470 | Gene3D | Transferase(Phosphotransferase) domain 1 | 230 | 439 | - | - | |
Cmu02g0539 | 470 | PANTHER | OS01G0323000 PROTEIN | 20 | 445 | IPR052232 | - | |
Cmu02g0539 | 470 | FunFam | Putative receptor-like serine/threonine-protein kinase | 230 | 440 | - | - | |
Cmu02g0539 | 470 | ProSiteProfiles | Protein kinase domain profile. | 154 | 433 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu02g0539 | 470 | CDD | STKc_IRAK | 160 | 426 | - | - | |
Cmu02g0539 | 470 | SUPERFAMILY | Protein kinase-like (PK-like) | 130 | 426 | IPR011009 | - | |
Cmu02g0539 | 470 | Gene3D | Phosphorylase Kinase; domain 1 | 129 | 229 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu02g0539 | Cmu-Chr2:5082001 | Cmu08g1542 | Cmu-Chr8:27273886 | 7.00E-141 | dispersed | |
Cmu02g0539 | Cmu-Chr2:5082001 | Cmu05g0152 | Cmu-Chr5:1349206 | 2.40E-141 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75289 | PF00069 | Pkinase | 3.50E-45 | CL0016 | Cmu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu02g0539 | - | - | - | 0.0 |