Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0544 ATGGAGGAGAAGCGCCGCGACACCGCAAATTTACCCCCCAATACCACCGATTCTCCCTCATCGGAGCCGCCTTCTTCTCGCCGTCGTGCTGGAGCTCAGAAGCGAAAGGCTAGCTCTCTTGGTGGCTCTAACTCCTCATCCGGGCCCTCGAAACGCGTTACTCGCGACAAATCTGCGCTTTCGCATCCTCCAAATCATAACGGCCCCTTCACCAGAGCTCGACTTGGCCCTAACAATGGCGCTGGGGCAGCATCGGCTAACGCGGCTGGAGGTCTCGCCGCCGGATCAGTTAAGGCGGAGGGCTCTTTACTTCATTCCGAAGTTCAGCGTGGAGATGCGTTGGTCGCTGCGGCGGAAGAATTGAATAAGGCGAGTAGATTGGCTAATTTGGAGGCGTCTTTCGAAGCTGATTTCGAAGCTATTAAATCTCGAGGTGCAAATGTTCATGTCGTTCCGAATCATTGTGGTTGGTTTTCATGGACAAAAGTCCACCCAATTGAGGAACGCACAATGTCTACTTTTTTCAGTGGAAAGGTTGGCACTCGAAGTCCTGATATTTATATTGAGATACGTAATTGGATTATGAAAAAATTTCACGCAAATCCTAGTAAGCAGATTGAATCAAAAGATTTATCAGAGCTGGAAGTTGGAGAACTAAATGCTAGACAGGAGGTGATGGAGTTTCTAGACCATTGGGGTTTGATTAATTTTCACCCTTTCCTAGCCGCAGATTCAATTTCAACAAATGATGTAGATGATGAAAATCAAAAGGACTCTTTGGTTGAGAAGTTGTTTCACTTTGAAACGTTAGAATCCTGCCCATCTATTGTTCCAAAGATTAATGCCACCACTGCAGCTCCACCTAGATTGCTTCGAGAATCTGCAATTTCTGAAGAGATGGTGAGGCCTGAGGGTCCATCTGTTGAGTACCACTGTAACTCATGCTCTGCTGATTGCTCCCGGAAACGTTACCACTGCCAGAAGCAGGCAGATTTTGATTTATGTTCGGAGTGCTTTAACAATGGCAAATTTGATTCTGATATGTCTTCGTCAGATTTTATTCTCATGGAGTCTGCTGGGGTTCCTGGTGCTAGTGGAGGTAAGTGGACAGATCAGGAAACTCTCCTCCTCCTTGAGGCTTTAGAGCTTTATAAGGAAAACTGGAATGAGATTGCAGAACATGTAGCCACCAAAACAAAAGCCCAATGTATATTGCACTTCATTCAAATGCCAATTGAGGATACCTTTCTTGAATCTGAAGGCAATGTGGAAGTCAGTGCAAAAGAAACAATTGTTCCACCTATAATTGAAAAAGATTCATCAGCTCCTTCTGATATCACTGGATCAATGGATAATAAGGCTGCTGGAAAAGAGGCTTCAAATGTAGAAACTGCGAGCAAGGAAGATACAGGTGAGGTAAAAGTTGGGCAGGACAATTCAAAATCAGAGGATGTTGAAGGAAAAGCTTCTTTAGATAACTCTAAATCAGAAGATGGTGATCAGAAGGTTTCTGAAGACATTGCCTTGAATGCTTTGCGGGAGGCATTTGAAGCCATTGGTTATGTATTAACACCTGAACACTCACTTTCATTTGCTGATGTAGGAAACCCTGTAATGGCACTGGCTGCATTCCTTGCACGCTTAGTTGGATCAGATGTTGCCAGTGCATCAGCCCATTTTTCTTTGAAAAGCATATCTCAGAAATCTCCCAGTTTAGACCTGGCTACAAGGAACTGCTTTATTTTAGAAGATCCACCGGATGACAAGAAGGCACAAACTAATTCAGAGAGCATTGACAATGTGGAAGCTCCGAAAAATGATAAGGAACAGTCTGCGAAACAGAGGGAAGACAATTCTACTTCAGTCTTAGATGACGGAGCCGTATCAACTAATAACAGTAATAACAAAAGTGGAGAATCTGTGACAAAGGGAACAACGGAGAATGGAAATTCTTCAGATGCTATTAGAGAACACAATCCAATCATTAATCATGGTTCAGATAAAACAAGTAATTTAAAAGAATTGGGAGAACCAGAATTGCCGAAGGGTGTAAAAACAGGCATTGTGAAGGAATCTGAAAATTTAGAATCAAAATTGACATCAAATCCAGTTGAAAAGTTGGGAGAAGGAACTCCTGTTGAAAAGCCATCACAATCTACGTTGTCATCAAAGGATGTGCACATGTCAGATTTGCAGCATGCTGAAAAATCTGAGATTCAGAAACAAGCTCCATCTCATTCTGCCAAAACTTCAAAAGAATTAAATGATGAGCCAAATCATTTACCGTCTGGGGATGAGCCTCAACCAATAATTTCTGCTAATTGTGTGAAAGAAGCCTCAAACGATGTAGCTATGGTGTCTGATTCTCACAATAAGAATGAACCTAGACAAACTGAAACATCTAAATCCGCGGTTGACCAGGGAGCAAGCAAGGTCTCTGATTCTTTGCCCTCAGCAGAGAATGCAACTCCACAATCAGTCAAACCAAATTCAGTTGTTGAAAGAGGAGCAGGTATGATAGCTTTCTATCTACTGATCGCCTGCCTTAGTGATCTAGGGAGGAATGCTAACTGGAAACTTTTAGGAAAATTATCTCAAGATAAGCATGACTTGTTTATCCTTCAAGAGACAAAGCATTCAAGGGTTCATGGGAATCCATTCATAGCATTTAGAATTGTCGTTTTCCTGGAGGCATATTCTTTGTATGCAACTCACTACCTTCCTAGCCTGGGAGTCATGGATCATAGAATTTATTCATTCACTTCCATAAATGTAATAATGGTCCTTCCAGCTGAATATGCTCTTGTTATCCAAATGAAGAGGAAACAAGTTGGAGTTACAAAGCGAGAGCTTCATGGGATGGAAGGATCGATCTCATGGTGTATTTCTTTTGGGGTGCCCTCTACCGCCGGGCCCTTAGGTTCTTGTTCCCTTTTGGAATACAATCCTCTTGTTTCTTATAAGGAAAATGGACTAACTCTTTTAGGGACAGGCGGTGGAAAGAGAGATGATAATGAAAGCAAGGACAATAAAGAAGAAAACTCCAATAGTGCGAGTAAAAAAGACGATAAAATTGATAAGCTGAAGCGTGCTGCAGTTACGACATTGTCAGCAGCTGCAGTGAAGGCAAAAGTTCTGGCTAATCAAGAAGAGCACCAAATCCGTCAGCTTGCCATGATATTAATCGAAAAACAGCTGCATAAGTTGGAAAGCAAGTTAGCATTCTTCAACGAGATGGATAATGTGACAATGAGAGTGAGGGAGCAACTAGACAGGTCAAAGCAGAGGCTTTTCCAGGAACGTGCACAGATAATTGCTGCTCGACTCGGCATACCTGCTTCATCGTCACGAGGTGTAGCACCGACATTACCAGCAAACAGAATGGCCATGAACTTTCCAAACTCAGCCCCAAGGCCTCCAATGGGCATGACGCCCCAAAGGCCACTGACTTCGGGACCACCGGGTATGGCTGCTACTAACCCTAACCCCCAATACACAACCACCAGTACAACAATTTCTGGGAGTTCATTTCGCCCTACAAATCAGGACACACTTTCTTCTGTTGGGACCAAGTAA 3576 43.23 MEEKRRDTANLPPNTTDSPSSEPPSSRRRAGAQKRKASSLGGSNSSSGPSKRVTRDKSALSHPPNHNGPFTRARLGPNNGAGAASANAAGGLAAGSVKAEGSLLHSEVQRGDALVAAAEELNKASRLANLEASFEADFEAIKSRGANVHVVPNHCGWFSWTKVHPIEERTMSTFFSGKVGTRSPDIYIEIRNWIMKKFHANPSKQIESKDLSELEVGELNARQEVMEFLDHWGLINFHPFLAADSISTNDVDDENQKDSLVEKLFHFETLESCPSIVPKINATTAAPPRLLRESAISEEMVRPEGPSVEYHCNSCSADCSRKRYHCQKQADFDLCSECFNNGKFDSDMSSSDFILMESAGVPGASGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFIQMPIEDTFLESEGNVEVSAKETIVPPIIEKDSSAPSDITGSMDNKAAGKEASNVETASKEDTGEVKVGQDNSKSEDVEGKASLDNSKSEDGDQKVSEDIALNALREAFEAIGYVLTPEHSLSFADVGNPVMALAAFLARLVGSDVASASAHFSLKSISQKSPSLDLATRNCFILEDPPDDKKAQTNSESIDNVEAPKNDKEQSAKQREDNSTSVLDDGAVSTNNSNNKSGESVTKGTTENGNSSDAIREHNPIINHGSDKTSNLKELGEPELPKGVKTGIVKESENLESKLTSNPVEKLGEGTPVEKPSQSTLSSKDVHMSDLQHAEKSEIQKQAPSHSAKTSKELNDEPNHLPSGDEPQPIISANCVKEASNDVAMVSDSHNKNEPRQTETSKSAVDQGASKVSDSLPSAENATPQSVKPNSVVERGAGMIAFYLLIACLSDLGRNANWKLLGKLSQDKHDLFILQETKHSRVHGNPFIAFRIVVFLEAYSLYATHYLPSLGVMDHRIYSFTSINVIMVLPAEYALVIQMKRKQVGVTKRELHGMEGSISWCISFGVPSTAGPLGSCSLLEYNPLVSYKENGLTLLGTGGGKRDDNESKDNKEENSNSASKKDDKIDKLKRAAVTTLSAAAVKAKVLANQEEHQIRQLAMILIEKQLHKLESKLAFFNEMDNVTMRVREQLDRSKQRLFQERAQIIAARLGIPASSSRGVAPTLPANRMAMNFPNSAPRPPMGMTPQRPLTSGPPGMAATNPNPQYTTTSTTISGSSFRPTNQDTLSSVGTK 1191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5131427 5140975 - CmPI595203_02g005440.1 Cmu02g0544 408593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0544 1191 Gene3D - 303 353 IPR043145 -
Cmu02g0544 1191 PANTHER SWI/SNF COMPLEX-RELATED 169 1135 - -
Cmu02g0544 1191 SUPERFAMILY Homeodomain-like 364 417 IPR009057 -
Cmu02g0544 1191 MobiDBLite consensus disorder prediction 583 770 - -
Cmu02g0544 1191 CDD SANT 385 410 IPR001005 -
Cmu02g0544 1191 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 367 415 IPR017930 -
Cmu02g0544 1191 Pfam SWIRM domain 159 237 IPR007526 GO:0005515(InterPro)
Cmu02g0544 1191 Gene3D - 364 415 - -
Cmu02g0544 1191 MobiDBLite consensus disorder prediction 996 1024 - -
Cmu02g0544 1191 Gene3D - 155 239 IPR036388 -
Cmu02g0544 1191 MobiDBLite consensus disorder prediction 1131 1191 - -
Cmu02g0544 1191 MobiDBLite consensus disorder prediction 462 502 - -
Cmu02g0544 1191 MobiDBLite consensus disorder prediction 670 692 - -
Cmu02g0544 1191 SMART zz_5 306 350 IPR000433 GO:0008270(InterPro)
Cmu02g0544 1191 MobiDBLite consensus disorder prediction 1001 1024 - -
Cmu02g0544 1191 SUPERFAMILY Homeodomain-like 156 238 IPR009057 -
Cmu02g0544 1191 MobiDBLite consensus disorder prediction 800 828 - -
Cmu02g0544 1191 MobiDBLite consensus disorder prediction 728 742 - -
Cmu02g0544 1191 MobiDBLite consensus disorder prediction 1153 1191 - -
Cmu02g0544 1191 Pfam Zinc finger, ZZ type 309 344 IPR000433 GO:0008270(InterPro)
Cmu02g0544 1191 MobiDBLite consensus disorder prediction 434 502 - -
Cmu02g0544 1191 ProSiteProfiles SWIRM domain profile. 149 246 IPR007526 GO:0005515(InterPro)
Cmu02g0544 1191 Pfam SWIRM-associated region 1 1035 1111 IPR032451 -
Cmu02g0544 1191 MobiDBLite consensus disorder prediction 11 27 - -
Cmu02g0544 1191 ProSiteProfiles Zinc finger ZZ-type profile. 307 361 IPR000433 GO:0008270(InterPro)
Cmu02g0544 1191 MobiDBLite consensus disorder prediction 37 65 - -
Cmu02g0544 1191 Pfam Myb-like DNA-binding domain 367 409 IPR001005 -
Cmu02g0544 1191 MobiDBLite consensus disorder prediction 713 727 - -
Cmu02g0544 1191 ProSiteProfiles SANT domain profile. 364 415 IPR017884 -
Cmu02g0544 1191 MobiDBLite consensus disorder prediction 1 86 - -
Cmu02g0544 1191 CDD ZZ_RSC8 310 354 IPR041984 -
Cmu02g0544 1191 FunFam SWI/SNF complex subunit SMARCC2 isoform C 364 415 - -
Cmu02g0544 1191 MobiDBLite consensus disorder prediction 786 828 - -
Cmu02g0544 1191 ProSiteProfiles Myb-like domain profile. 361 411 IPR001005 -
Cmu02g0544 1191 ProSitePatterns Zinc finger ZZ-type signature. 312 338 IPR000433 GO:0008270(InterPro)
Cmu02g0544 1191 MobiDBLite consensus disorder prediction 583 620 - -
Cmu02g0544 1191 SUPERFAMILY RING/U-box 308 356 - -
Cmu02g0544 1191 MobiDBLite consensus disorder prediction 621 657 - -
Cmu02g0544 1191 SMART sant 365 413 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0544 K11649 - - csv:101218015 1385.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0544 Cmu-Chr2:5131427 Cmu11g1587 Cmu-Chr11:28155152 2.00E-51 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g579 . . . . . . . . Cmo19g00671 . . . . . . . Cpe15g00532 Bhi05g01108 . . . . . . Cla02g00530 Cam02g0548 Cec02g0549 Cco02g0555 Clacu02g0549 Cmu02g0544 Cre02g0875 Cone12ag1145 Cone8ag1193 . . . . . . Blo04g00506 . . Bda14g00547 . . Bma03g00547 . . . . . Cma19g00658 . Car19g00501 . . . . . . . . . . . . . . . . Lsi11g01094 . Chy01g00796 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007586 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 3 1 2 2 1 1 1 1 1 2 1 1 1 1 1 36