Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0623 ATGGCTGAGCCTCGGCCTTTACCAGCCCCGTTTGAATTCAAATCAAACTACGGAGCTCTCTTTATTGGCGCTCGAAATTCTCTCTCAAGAGCCCATCACTGGAAAATCGAAGGGAACGAGCTTCAGTTCAGCGACGGAATCCTACAACAGAAAATGGTGGAATCGAACCTGACTTACGAGGAATGCCGACGCCAGAGGTTGGAAGAGAATAAGAAGAGGATGGAAGAGCTTAATCTGAACAAACTTGCCGATGCTCTGAAATTTTCCAGCCCTAAATCCTCTCCGACCAAACAGCTAAAGCGTCCTCGTCAGCCACTCGATAAGTCGTCTTTCAGTGTGAGAAGGTCTAGCCGTTTTGCCGATAAGCCCCCTCCGAACTATAAGGAGGTGCCCATTGAACCACTTCCAGGTATAAGAAGGACTTATCAAAGGAGAGATTTGCTGAATCGGATTTATGCTTCACAAGAAGAAAGGCAATATGCTATTGACAGAGCAAGAGACCTTCAATCTAGCCTGGAATCTAGGTACCCCAGTTTTGTGAAGCCCATGCTTCAATCACATGTCACAGGGGGATTTTGGCTGGGTCTACCAGTTCACTTTTGCAAGACACACCTTCCCCTTGAGGATGAAATGCTAACTCTGGTTGACGAGGATGATAATGAGTTCCAAACAAAATACCTTGCCGATAAAACAGGTCTCAGTGGTGGTTGGAGAGGGTTTTCCATTGATCATCAGTTAGTAGATGGGGATGCTTTGGTGTTTCAGTTAACTAAGCCAACTGAATTCAAGGTATATATCATCAGAGCATACAATTTAGAAGACAGAGAAGATACCAATGAGGATTCTGATGTCACCCAATTGGAAAAAAGTAGCAAAAGAAATACCAAATCATCAGGGCATAAATCCAGGGCAAATAATTCTGAGGATAAAGGAGATAATGGGCAAATAAATCCAAAGATAAAGCAGATAACGGCGCGGATTTGGATGTCCCCGAGCTGGAAAAAAGTGGCAAAAGAATTACTAGATCATCAAGGCAAAAGTAACTCAAGGTTTTCCTTTGGCACAAGGATTATTATAAGTATCCCTATCCAAGGCTTTCCAAACAAAAAGGGTTTAGGCATTTTCCGATCAGAAATGGCGTCTCTCATGGCGGTTCGGCGTGCTCGAACCCCTATTCTTATCTCCTCCTTCTTCAAGGTACGGTCTCCTCTCCCTTCTCGTTTCACCTTCACTTGTGGAAATCAGACAGATACCCTAATCAAAGCCCTAAGCACCTCGGCAATCCGTAACGATTTCTCAAATTTTCCTCCTCCGCCGCAACAACCTTCTTCGTCTGACCCTCGACATCGTCAAGCCCAGTGGGGCTCGCCGAGCCAGGTTCATCCTCCGAGTGGAAATTTTAATAATCAGTCGTTCTCGGAGTTTCAGAATCGCGATTATGTTCAACAGGGAAGCCCCAGTAATCAATTGAAGTATCGGAGTCAGAATCAGAGCCCTCAACCCAATCCTGGATTTTCCCGGCAGGGTCAGAGCTATAGTCAACCCGGTAACCCTAATTCGTGGAATCCTCCAAATCAAAGCTACCCGCAGTATCAAAATCCTTCGCAGGCGAACCCTCAAAATTTCAATTATCAGCAACAAAGAGGCCCTAACCAATGGAACAATCAAAAACAGGGATATCCACAATTTGGAAGGCCTGAACAGCGTAACCCACAAGTAGAGAATTCTAATCAGTTGAATAATCAGGCTGGGATTCAAAGGCAAGGTGCTCAAAATCAAGCACTAAATGCCCTTGTATCTCCTATTGACGAACTGCGGCGCCTTTGTGGAGAGGGGAAGATGAAAGAAGCTGTTGAATTATTGAAAGAAGGTGTTAAAGCTGATGCTGATTGTTTCCATTTGTTGTTTGAACTATGTGGGAAATCCAAGTCATTTGACAATGCTAAAGTAGTTCATGATTACTTTTTACAGTCAACTTGTAGAAGTGATCTGCAATTGAATAATAAAGTGCTTGAGATGTATGGGAGATGTGGAAGCATGAGTGATGCACGGAGAGTGTTCGACTATATGCCTGATAGAAATATTGATTCTTGGCATTTTATGATGAAAGGATATGCTGATAATGGATTGGGTGATGAGGGTCTGGAGTTATTTGAGAATATGAAGCAGCTAGGGTTGCAACCCGATTCACAAACTTTCCTTTTTGTTATGTCAGCTTGTGCTAGTGCGAATGCTGTGGAAGAAGGATTTCTGTACTTTGAGTCAATGAAAAATGATTATCATATTACCCCAGACATGGATCATTATTTGGGGCTTTTAGGTATTCTTGGAGAACCAGGACACATTAATGAGGCTTTCGAGTATGTTAAGAAACTGCCAATGGAGCCCACAGTTGAGGTATGGGAGACTTTAAAGAACTATGCTAGAATTCATGGAGATGTTGATCTTGAGGACTATGCAGAGGAGCTAATTGTTGATCTGGACCCGACAAAAGCTGTTTCTAATAAGATATCGACACCACCTCCCAAAAAACGGTCTGCAATTAGCATGCTTGATGGGAAGAACAGGATTAGTGAATTCAGAAATCCAACTCTCTACAAAGATGATGAAAAATTGAAGGCTTTGAAGGCAATGAAAGAACAAGGGTATGTGCCAGATACTAGATATGTTCTTCACGATATCGATCAAGAGGCCAAAGAGCAGGCATTGCTGTATCACAGTGAACGATTGGCAATCGCATATGGATTGATCAGTACTCCGGCACGAACGCCTCTTAGGATCATTAAGAACCTAAGGATCTGCGGTGATTGTCATAATGCCATCAAAATCATGTCTAGAATTGTTGGGAGAGAGTTAATTGTAAGGGACAACAAACGGTTCCATCATTTTAAGGATGGTAAATGTTCTTGTGGGGATTACTGGTAA 2925 43.04 MAEPRPLPAPFEFKSNYGALFIGARNSLSRAHHWKIEGNELQFSDGILQQKMVESNLTYEECRRQRLEENKKRMEELNLNKLADALKFSSPKSSPTKQLKRPRQPLDKSSFSVRRSSRFADKPPPNYKEVPIEPLPGIRRTYQRRDLLNRIYASQEERQYAIDRARDLQSSLESRYPSFVKPMLQSHVTGGFWLGLPVHFCKTHLPLEDEMLTLVDEDDNEFQTKYLADKTGLSGGWRGFSIDHQLVDGDALVFQLTKPTEFKVYIIRAYNLEDREDTNEDSDVTQLEKSSKRNTKSSGHKSRANNSEDKGDNGQINPKIKQITARIWMSPSWKKVAKELLDHQGKSNSRFSFGTRIIISIPIQGFPNKKGLGIFRSEMASLMAVRRARTPILISSFFKVRSPLPSRFTFTCGNQTDTLIKALSTSAIRNDFSNFPPPPQQPSSSDPRHRQAQWGSPSQVHPPSGNFNNQSFSEFQNRDYVQQGSPSNQLKYRSQNQSPQPNPGFSRQGQSYSQPGNPNSWNPPNQSYPQYQNPSQANPQNFNYQQQRGPNQWNNQKQGYPQFGRPEQRNPQVENSNQLNNQAGIQRQGAQNQALNALVSPIDELRRLCGEGKMKEAVELLKEGVKADADCFHLLFELCGKSKSFDNAKVVHDYFLQSTCRSDLQLNNKVLEMYGRCGSMSDARRVFDYMPDRNIDSWHFMMKGYADNGLGDEGLELFENMKQLGLQPDSQTFLFVMSACASANAVEEGFLYFESMKNDYHITPDMDHYLGLLGILGEPGHINEAFEYVKKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKAVSNKISTPPPKKRSAISMLDGKNRISEFRNPTLYKDDEKLKALKAMKEQGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6066458 6073354 + CmPI595203_02g006230.1 Cmu02g0623 408672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0623 974 MobiDBLite consensus disorder prediction 277 316 - -
Cmu02g0623 974 MobiDBLite consensus disorder prediction 445 471 - -
Cmu02g0623 974 Coils Coil 57 84 - -
Cmu02g0623 974 Pfam PPR repeat family 694 741 IPR002885 -
Cmu02g0623 974 CDD B3_DNA 177 268 IPR003340 GO:0003677(InterPro)
Cmu02g0623 974 Gene3D - 153 271 IPR015300 -
Cmu02g0623 974 MobiDBLite consensus disorder prediction 85 133 - -
Cmu02g0623 974 SUPERFAMILY DNA-binding pseudobarrel domain 172 269 IPR015300 -
Cmu02g0623 974 MobiDBLite consensus disorder prediction 483 575 - -
Cmu02g0623 974 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 603 751 - -
Cmu02g0623 974 Pfam DYW family of nucleic acid deaminases 882 974 IPR032867 GO:0008270(InterPro)
Cmu02g0623 974 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 694 728 IPR002885 -
Cmu02g0623 974 ProSiteProfiles B3 DNA-binding domain profile. 179 270 IPR003340 GO:0003677(InterPro)
Cmu02g0623 974 NCBIfam pentatricopeptide repeat 697 730 IPR002885 -
Cmu02g0623 974 Gene3D Tetratricopeptide repeat domain 603 759 IPR011990 GO:0005515(InterPro)
Cmu02g0623 974 PANTHER OS07G0578800 PROTEIN-RELATED 606 833 IPR045215 GO:0003723(InterPro)|GO:0003723(PANTHER)|GO:0009451(InterPro)|GO:0009451(PANTHER)|GO:0043231(PANTHER)
Cmu02g0623 974 SMART B3_2 179 270 IPR003340 GO:0003677(InterPro)
Cmu02g0623 974 MobiDBLite consensus disorder prediction 430 471 - -
Cmu02g0623 974 Pfam B3 DNA binding domain 179 268 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0623 Cmu-Chr2:6066458 Cmu01g2344 Cmu-Chr1:35552958 1.90E-71 dispersed
Cmu08g1513 Cmu-Chr8:26997796 Cmu02g0623 Cmu-Chr2:6066458 1.30E-63 dispersed
Cmu03g1650 Cmu-Chr3:19609458 Cmu02g0623 Cmu-Chr2:6066458 6.30E-69 transposed
Cmu07g1355 Cmu-Chr7:28848095 Cmu02g0623 Cmu-Chr2:6066458 4.30E-127 transposed
Cmu02g0623 Cmu-Chr2:6066458 Cmu05g1103 Cmu-Chr5:10432479 8.30E-33 wgd
Cmu02g0623 Cmu-Chr2:6066458 Cmu08g1512 Cmu-Chr8:26987211 1.20E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5710 PF14432 DYW_deaminase 6.90E-33 CL0109 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0623 - - - 0.0