Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu02g0641 | ATGGCTCAGGTTCCACCTCAACCTCAAGTTCCCAACTCCGGTGCCGATCCGGCCGCCAATGGAGCGGCAAATCAGCATGTCACGACCTCCTTGTATGTTGGAGATCTTGACGTCAACGTCACCGATTCTCAGCTCTACGATCTTTTTAATCAGGTGGGGCAGGTGGTTTCTGTTAGGGTTTGCAGGGATTTGACCACCCGTCGATCGCTTGGTTATGGCTATGTCAATTACAGCAACCCAGTTGATGCGTCAAGGGCATTAGATATGCTAAACTTCACCCCTTTGAATGGGACTCCCATTAGAGTCATGTATTCACATCGTGACCCTAGCGTGCGGAAAAGTGGGTCTGGAAATATTTTTATCAAGAACTTGGACAAGGCAATTGATCACAAAGCTCTGCACGATACCTTTTCTGCATTTGGAAGCATTCTATCTTGCAAGGTTGCTACAGATTCATCTGGCCAGTCCAAAGGCTTTGGTTTTGTGCAATTTGACACTGAGGAAGCTGCCTTAAAAGCTATAGAAAAGTTGAATGGTATGCTGCTAAATGACAAGCAGGTGTTTGTGGGACCTTTCCTTCGCAAGCAAGAAAGAGAAAGTGTCAGTGAGAAAACGAAATTTAATAATGTTTTTGTTAAGAATCTAGCAGAAACTACATCTGAAGAAGATTTGAAGAATATGTTTGGGGAGTTTGGACCAATCACCAGTGTTGTGGTGATGAGGGATGGGGAAGGAAAATCAAAATGCTTTGGCTTTGTTAACTTTGAGAATGCGGATGATGCTGCTAGATCTGTTGAAGCCCTCAATGGAAAGAAGGTTGATGGGAAAGAGTGGTATGTTGGAAAAGCCCAGAAGAAATCTGAAAGGGAAGTTGAACTGAAAAATCGATTTGAGCAGAGTGTAAAAGAAGCTGCTGACAAGTATCAAGGTGCAAACTTGTATGTTAAGAATTTAGATGATAGCATTGACGATGAAAAGCTGAAGGAGTTATTCACTGGGTTTGGAACCATTACCTCATGCAAGGTTATGCGTGACCCCAATGGAATCAGTAGAGGATCTGGCTTTGTTGCATTCTCAACTCCAGAAGAGGCTGGCAGAGCTCTTGCAGAGATGAATGGAAGAATGATTGTGAGCAAGCCTCTTTATGTTGCACTTGCACAGAGGAAGGAAGATAGAAGAGCTAGGTTGCAGGCACAATTTTCCCAAATGCAGCCAATGGCAATGGCATCTTCAGTTGCTCCTCGTGGCATGCCAATGTATCCTCCAGGTGGTCCAGGTATTGGACAACAGATATTCTATGGCCAAGCTCCACCTACTATTATTTCCTCCCAGCCCGGCTTTGGTTATCAACAGCAACTCATGCCTGGAATGAGGCCTGGTGGAGGTCCCATGCCAAATTTCTTTGTACCAATGGTTCAGCAGGGCCAGCAAGGGCAAAGATCCGGTGGCAGGCGTGCTGGTGCCATTCAGCAAACCCAGCAGCCTGTTCCTTTGATGCAGCAGCAGATGCTACCAAGAGGACGTGTCTACCGTTATCCTCCTGGACGTGGACTGCCTGATCTTCCCATGCCTGGTGTTGCTGGAGGCATGTTCTCTGTTCCATATGAGATGGGTGGAATGCCACCGCGGGATGCAGTCCACCCTCAACCAGTTCCTGTGGGTGCTTTGGCTTCTGCTCTTGCAAATGCAACTCCAGACCAGCAGAGAACGATGCTGGGGGAAAATCTTTATCCACTTGTGGAACAGCTAGAGCCTGATAATGCGGCCAAGGTAACAGGAATGCTATTGGAAATGGACCAAACTGAGGTTCTTCACTTGCTGGAGTCGCCTGAAGCTCTGAAAGCCAAGGTGGCGGAGGCGATGGAGGTTTTAAGAAGTGTCGCTCAGCAGACTGGCAATGCAGCTGATCAATTGGCTTCACTATCTCTGACTGACAACCTTGATTCCTAA | 1950 | 46.92 | MAQVPPQPQVPNSGADPAANGAANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPVDASRALDMLNFTPLNGTPIRVMYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKNRFEQSVKEAADKYQGANLYVKNLDDSIDDEKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSTPEEAGRALAEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRSGGRRAGAIQQTQQPVPLMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMGGMPPRDAVHPQPVPVGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQTGNAADQLASLSLTDNLDS | 649 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 6338645 | 6342037 | - | CmPI595203_02g006410.1 | Cmu02g0641 | 408690 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu02g0641 | 649 | PANTHER | RNA BINDING PROTEIN | 23 | 209 | - | GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER) | |
| Cmu02g0641 | 649 | FunFam | Polyadenylate-binding protein | 294 | 399 | - | - | |
| Cmu02g0641 | 649 | FunFam | Polyadenylate-binding protein | 16 | 114 | - | - | |
| Cmu02g0641 | 649 | SUPERFAMILY | RNA-binding domain, RBD | 208 | 391 | IPR035979 | GO:0003676(InterPro) | |
| Cmu02g0641 | 649 | Gene3D | - | 3 | 110 | IPR012677 | - | |
| Cmu02g0641 | 649 | Gene3D | - | 111 | 197 | IPR012677 | - | |
| Cmu02g0641 | 649 | SUPERFAMILY | RNA-binding domain, RBD | 29 | 198 | IPR035979 | GO:0003676(InterPro) | |
| Cmu02g0641 | 649 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 208 | 285 | IPR000504 | GO:0003723(InterPro) | |
| Cmu02g0641 | 649 | CDD | RRM3_I_PABPs | 207 | 286 | - | - | |
| Cmu02g0641 | 649 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 311 | 388 | IPR000504 | GO:0003723(InterPro) | |
| Cmu02g0641 | 649 | SUPERFAMILY | PABC (PABP) domain | 493 | 638 | IPR036053 | GO:0003723(InterPro) | |
| Cmu02g0641 | 649 | Gene3D | - | 198 | 295 | IPR012677 | - | |
| Cmu02g0641 | 649 | Gene3D | - | 296 | 401 | IPR012677 | - | |
| Cmu02g0641 | 649 | FunFam | Polyadenylate-binding protein | 199 | 293 | - | - | |
| Cmu02g0641 | 649 | Pfam | RNA recognition motif | 313 | 381 | IPR000504 | GO:0003723(InterPro) | |
| Cmu02g0641 | 649 | Pfam | RNA recognition motif | 210 | 278 | IPR000504 | GO:0003723(InterPro) | |
| Cmu02g0641 | 649 | Pfam | RNA recognition motif | 31 | 101 | IPR000504 | GO:0003723(InterPro) | |
| Cmu02g0641 | 649 | Pfam | RNA recognition motif | 119 | 186 | IPR000504 | GO:0003723(InterPro) | |
| Cmu02g0641 | 649 | CDD | RRM1_I_PABPs | 30 | 109 | IPR034364 | - | |
| Cmu02g0641 | 649 | Gene3D | - | 547 | 631 | - | - | |
| Cmu02g0641 | 649 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Cmu02g0641 | 649 | CDD | RRM2_I_PABPs | 115 | 191 | IPR045305 | - | |
| Cmu02g0641 | 649 | CDD | RRM4_I_PABPs | 310 | 388 | - | - | |
| Cmu02g0641 | 649 | SMART | rrm2_1 | 118 | 190 | IPR003954 | GO:0003676(InterPro) | |
| Cmu02g0641 | 649 | SMART | rrm2_1 | 209 | 281 | IPR003954 | GO:0003676(InterPro) | |
| Cmu02g0641 | 649 | SMART | rrm2_1 | 312 | 384 | IPR003954 | GO:0003676(InterPro) | |
| Cmu02g0641 | 649 | SMART | rrm2_1 | 30 | 103 | IPR003954 | GO:0003676(InterPro) | |
| Cmu02g0641 | 649 | FunFam | Polyadenylate-binding protein | 548 | 630 | - | - | |
| Cmu02g0641 | 649 | Pfam | Poly-adenylate binding protein, unique domain | 559 | 624 | IPR002004 | GO:0003723(InterPro) | |
| Cmu02g0641 | 649 | SMART | rrm1_1 | 312 | 384 | IPR000504 | GO:0003723(InterPro) | |
| Cmu02g0641 | 649 | SMART | rrm1_1 | 30 | 103 | IPR000504 | GO:0003723(InterPro) | |
| Cmu02g0641 | 649 | SMART | rrm1_1 | 209 | 281 | IPR000504 | GO:0003723(InterPro) | |
| Cmu02g0641 | 649 | SMART | rrm1_1 | 118 | 190 | IPR000504 | GO:0003723(InterPro) | |
| Cmu02g0641 | 649 | FunFam | Polyadenylate-binding protein | 115 | 198 | - | - | |
| Cmu02g0641 | 649 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 552 | 629 | IPR002004 | GO:0003723(InterPro) | |
| Cmu02g0641 | 649 | SMART | poly_2 | 564 | 627 | IPR002004 | GO:0003723(InterPro) | |
| Cmu02g0641 | 649 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 30 | 625 | IPR006515 | GO:0003723(InterPro) | |
| Cmu02g0641 | 649 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 117 | 189 | IPR000504 | GO:0003723(InterPro) | |
| Cmu02g0641 | 649 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 29 | 107 | IPR000504 | GO:0003723(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmu02g0641 | Cmu-Chr2:6338645 | Cmu08g0665 | Cmu-Chr8:18907602 | 9.80E-186 | dispersed | |
| Cmu05g0332 | Cmu-Chr5:2816614 | Cmu02g0641 | Cmu-Chr2:6338645 | 3.30E-16 | transposed | |
| Cmu05g0795 | Cmu-Chr5:7062167 | Cmu02g0641 | Cmu-Chr2:6338645 | 6.90E-30 | transposed | |
| Cmu07g1708 | Cmu-Chr7:32325204 | Cmu02g0641 | Cmu-Chr2:6338645 | 7.40E-08 | transposed | |
| Cmu08g0720 | Cmu-Chr8:19556520 | Cmu02g0641 | Cmu-Chr2:6338645 | 2.60E-06 | transposed | |
| Cmu10g2514 | Cmu-Chr10:31837242 | Cmu02g0641 | Cmu-Chr2:6338645 | 1.40E-08 | transposed | |
| Cmu02g0641 | Cmu-Chr2:6338645 | Cmu05g1123 | Cmu-Chr5:10663532 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu02g0641 | K13126 | - | csv:101223017 | 1196.42 |