Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0661 ATGGCGATTTCCCCCACTTTCTCCTTCCCCATCCTTGCTTTTCTTGCCCTCTTCCTCTGTTTTTCCCCATTTTCATCCGCTTCCCTTTCATCCACCTTCTCCATCATCGATGAAAATGCAAAACACCACCTGGGTATCCCCGAAATTGCCGATTCTGATGCCCAAGGATCCCCTCAACGGACCGACGCCGAGGTTGCGGCTCTGTACGAGTCCTGGTTGGTCCATCATGGAAAAGCCTACAACGCTCTCGGCGAGAAGGAGAGGCGGTTTGAGATTTTCAAGGATAATCTCAGGTTCATCGATGAACATAACCGGGAATCGCGGACGTATAAAGTTGGTTTGACCCGTTTCGCCGATCTCACCAATGAGGAGTATCGGGCAAAGTTTTTGGGTGGCCGAATCTCCCGGAAGCCTCGCCTATCTGCCGTCAAGAGCGGTAGATACGCGGCTACGCTCGGCGATGATCTTCCGGATCATGTCGATTGGAGAAAGAAGGGCGCTGTTGCGGCTGTTAAAGATCAAGGACAGTGTGGGAGCTGTTGGGCTTTCTCAACAGTTGCTGCAGTGGAAGGAATAAATCAAATCACCACCGGTGAATTGATCTCTCTGTCGGAGCAGGAACTTGTGGACTGTGACAAATCATATAACATGGGGTGCAATGGTGGTCTTATGGACTATGCTTTCCAGTTCATCATTGATAATGGTGGAATTGACACTGACGAAGATTACCCTTACAAGGGCCATGATGGTGCTTGTGATCCCAACCGGAAAAATGCCAAGGTTGTAACCATAGATGGATATGAAGATGTTCCTGAGAATGATGAGAGCTCCTTGAAAAAGGCTGTGGCAAGTCAACCAGTTAGTGTTGCCATTGAAGCTGGTGGCAGAGCCTTCCAACTTTACCAATCGGGTGTCTTCACTGGCCGTTGCGGAACCAATCTGGATCACGGTGTTGTCGCTGTTGGATATGGTACAGACAATGGTACAGATTATTGGATTGTGAGGAATTCATGGGGTAAAAACTGGGGAGAGAGTGGTTATATCAGGTTGGAGAGAAATGTGGCCAATATTACCACAGGCAAGTGTGGTATAGCAGTAGAGCCTTCATACCCCATCAAAACCGGAATGAACCCTCCAAAACCTGCTGCTTCTCCACCATCTCCTGTGAAGCCCCCGACCGAATGTGATGACTACTTCTCATGCGAGGAAGGAACTACCTGCTGCTGTATCTATCAATATGGAAGCACCTGCTTTGGTTGGGGATGCTGCCCGCTTGAATCCGCAACCTGCTGCGATGACCATTACAGTTGCTGCCCCCATGAATATCCAATCTGTGACCTCGAGGCAGGAACTTGCCTAATGAGCAAAGGCAGCACGATGGGAGTCAAACTGCTGAAGCGCCTTCCTGCGAAACGTACAAGAGGCATTGAGAAGCTTGGGAAGTTGTTTGTTGTCGCTGGTGCTTGGGATTTCTTGTGCCCTAGGCACCTTACGTGTGATCGTATCAACAGGTGGTGTTTTGATATTCCTAATGAACTTGTTTTGTACACTGGTAGTGATGAGACTAGGGACCTTGTTCTGTGCATTGGTAGTGACGAGACTAGGGACCGTTTATTTTTTTTATTGCCTTTTCAGCCAAGCTGTCTAGATCATATCATGGATCCAAATTCTACTGATTCCTCAACATCACCTACTGTTAATTCCTCGGAAACTAAACCACCAGAAGTACAGCCTCAGGCTCCTGCTACCACTGGAATGGATAATGTAACCCGTGATGCACCGTCTAAGCTATCTCCTAGTGGCATAACTTCATGGGCCAAAAACTTGAAAATTTCTCAACCACAGTCAGCTTCACAAGATGGAACGACTGATAATGCTGCTGGGAAGTCAGCTTTTGCACGTTTTACTAGTGGCTTAGGTTTGAACTTATCTCCAAAATCTGCTGCTTCTAATGATTCCCCAGATGGAACTTCTAAACCTGCCCAACCCAGTTTTGTGGGATCAATTACAAGAGGATTGGTTGACTCTTCAAAGAGTGCTGTAAAGGCTGTACAAGTTAAAGCTCGTCATGTTGTCTCCCAAAATAAGCGAAGATACCAGGAAGGTGGATTTGATTTGGATATGACTTATATTACTGAAAATATCATTGCCATGGGTTTTCCTGCTGGTGACATGAGCTCAGGGTTTTTTGGATATGTTGAGGGTTTCTACAGGAACCATATGGAAGAAGTCATCAAGTTCTTTGAATCACATCACAAGGGAAAATACAAAGTATATAATCTTTGTTCCGAGAGGCTATATGATGCTTCATTATTTGAAGGAAAGGTGGCTTGTTTTCCTTTTGATGACCATAACTGTCCCCCACTTCAACTCATAATATCATTTTGCCAAAGTGCTTATTCATGGCTGAAGGATGATATTGAAAATGTAGTGGTTGTGCATTGCAAGGCAGGAATGGCCAGGACAGGCTTGATGATTTCCAGCCTTCTTCTGTTTCTGAAGTTCTTTCCAACCGCTGAAGAATCCATTGAATACTACAACCAGAGAAGGTGTTTTGATGGCAAAGGTCTGGTTTTACCAAGTCAGATTAGGTATGTCAAATATTTTGAGCGTATTCTAACATACTTCAATGGAGAAAATCCTCCCAGTCGCAGATGTGTGCTTAGAGGGTTTCGTCTCCACAGATGCCCATATTGGATCAGGCCTTCCATTACTGTATCTGACCATAATGGTGTTCTGTTCTCCACTAAAGTACATCCAAGAACCAAGAGTCTCTCGCCAGAAGATTTTTGGTTTACTGCACCAAAGAAGGGGATAATGGTCTTTGCCTTGCCTGGGGAGCCTGGTCTAGCTGAGTTATGTGGGGACTTCAAGGTTCATTTTCACGACCGCCAAGGAGATTTCTATTGTTGGCTAAACACAACCATGACCGAAAATCGGAAAATGCTGTACACGAATGATCTTGATGGGTTTGACAAGAGGAAACTACCTTCCCCCGGATTTCAGGTGGAGGTTGTTCTAGTTGATACGTCGCCCAACATGGACAATACTACCAAGAAGTCGGATGAAAGCTCAGGCTCAAGACCTTCTGCAGCTGATGGAAGTGAAGTTTCTGAGAACCAAAACAGAAAATCAGGAACTAATGATAGAGATGATGTATTTTCTGATAGTGAATCAGAAGGTGGTTCTTCAAAGAGTAAGAAGGAGGCAACTTCAGGTTCAGGGAATGATGGATCAGCTGTCAAGCCGGCATCTAAATCTCAAACAAGTACGACTTCATCAGATGATGTTGCGAGTTTAACACATGCAACAAAGCAAGTTTCCCTGGGAGATGGTGGAGCTAAACAGACTGCTCCTCCCAGTGATCGAAAAGGCGATGGAGCTGGAAGATCTGATTCTCTCCCAGAAGTTCCAAACTCAGAAAGTGAATTCAAGGCAATGGCTGCTGATGCTTCTGTTTTCACATTTGGCGACGACGAAGACTATGAGAATTGCACGGCTACTTTATCAGTTCCTTTGATTTGTACTCATTACTCAAGTCCTTGTGCTCTTGTTTCTTGCGTCAGTCAATGGCTTGAGTCTAAGCGTGAGCAACTGTCGAAGGAGACGCGGCATCGGCAATATAATTGCGAAAGAGAAGTTTCTGGGGATTCAATTTCTTCGCCCTCTACTCTCAACGATTTCTCAGTTTTTGTTTTGTGGGTTGTGCTCGAAATATTCTATTCTGGTTGGTTCCCTTCAGAAAAGGTTATTGGATGCACAAAGTTGAAAGATACGGAATGGATTTCAAGGCAGGATCCTTATGTGTGCCTTGAATATGGTAGTACAAAGTTTCGCACCACCACTTGCACAGATGGTGGAAGAAATCCCACATTCCAAGAGAAATTTGTGTTTTCTCTTATTGAAGGGCTAAGAGAGATTAATGTCACAGTTTGGAACAGCAATACAGTTACTTATGATGACTTCATTGGCAATGGAAAAATCCAATTGGCAAAAGTTCTGGCAGAAGGGTATGATGACAGTTCATGGTCACTTCAAACTAAAACTGGCAGACATGCTGGGGAAGTGCGACTGATCTTACATTTTGCAAATGCCAATAGACCGTCGTCAAGTTTTGCTCCCTCGGCACCACCATTTCTTGCACCTACTCCACCCCAAGTCCCTGCATATGCTACGATGCCACCGGCACACCCGACAGCCTACCCTCCTCCTAGTGCTACACCGTATGCATCATTTCAATCTCCCTATCCTTCTTACCCACCCAGCTCTGGAGCATATCAAACATCCATGTACTCCCCATATCCATCTGGGTATCCTCCCACATCGTACCCGCTGCCTCCCTCGGGTTATCCTCCCAGTCCCTACCCACCACCTCCACAAGCCTCACCCTTCTATCCTCCAGGTCCTTATCCTGGAGTTTATCCCCCACCACAGTATTGA 4440 45.72 MAISPTFSFPILAFLALFLCFSPFSSASLSSTFSIIDENAKHHLGIPEIADSDAQGSPQRTDAEVAALYESWLVHHGKAYNALGEKERRFEIFKDNLRFIDEHNRESRTYKVGLTRFADLTNEEYRAKFLGGRISRKPRLSAVKSGRYAATLGDDLPDHVDWRKKGAVAAVKDQGQCGSCWAFSTVAAVEGINQITTGELISLSEQELVDCDKSYNMGCNGGLMDYAFQFIIDNGGIDTDEDYPYKGHDGACDPNRKNAKVVTIDGYEDVPENDESSLKKAVASQPVSVAIEAGGRAFQLYQSGVFTGRCGTNLDHGVVAVGYGTDNGTDYWIVRNSWGKNWGESGYIRLERNVANITTGKCGIAVEPSYPIKTGMNPPKPAASPPSPVKPPTECDDYFSCEEGTTCCCIYQYGSTCFGWGCCPLESATCCDDHYSCCPHEYPICDLEAGTCLMSKGSTMGVKLLKRLPAKRTRGIEKLGKLFVVAGAWDFLCPRHLTCDRINRWCFDIPNELVLYTGSDETRDLVLCIGSDETRDRLFFLLPFQPSCLDHIMDPNSTDSSTSPTVNSSETKPPEVQPQAPATTGMDNVTRDAPSKLSPSGITSWAKNLKISQPQSASQDGTTDNAAGKSAFARFTSGLGLNLSPKSAASNDSPDGTSKPAQPSFVGSITRGLVDSSKSAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFESHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPLQLIISFCQSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESIEYYNQRRCFDGKGLVLPSQIRYVKYFERILTYFNGENPPSRRCVLRGFRLHRCPYWIRPSITVSDHNGVLFSTKVHPRTKSLSPEDFWFTAPKKGIMVFALPGEPGLAELCGDFKVHFHDRQGDFYCWLNTTMTENRKMLYTNDLDGFDKRKLPSPGFQVEVVLVDTSPNMDNTTKKSDESSGSRPSAADGSEVSENQNRKSGTNDRDDVFSDSESEGGSSKSKKEATSGSGNDGSAVKPASKSQTSTTSSDDVASLTHATKQVSLGDGGAKQTAPPSDRKGDGAGRSDSLPEVPNSESEFKAMAADASVFTFGDDEDYENCTATLSVPLICTHYSSPCALVSCVSQWLESKREQLSKETRHRQYNCEREVSGDSISSPSTLNDFSVFVLWVVLEIFYSGWFPSEKVIGCTKLKDTEWISRQDPYVCLEYGSTKFRTTTCTDGGRNPTFQEKFVFSLIEGLREINVTVWNSNTVTYDDFIGNGKIQLAKVLAEGYDDSSWSLQTKTGRHAGEVRLILHFANANRPSSSFAPSAPPFLAPTPPQVPAYATMPPAHPTAYPPPSATPYASFQSPYPSYPPSSGAYQTSMYSPYPSGYPPTSYPLPPSGYPPSPYPPPPQASPFYPPGPYPGVYPPPQY 1479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6551902 6569666 + CmPI595203_02g006610.1 Cmu02g0661 408710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0661 1479 Gene3D Cysteine proteinases 52 374 - -
Cmu02g0661 1479 MobiDBLite consensus disorder prediction 644 664 - -
Cmu02g0661 1479 Pfam PTEN2, C2 domain 884 1010 - -
Cmu02g0661 1479 ProSiteProfiles C2 domain profile. 1222 1344 IPR000008 -
Cmu02g0661 1479 Gene3D Granulin 392 455 IPR037277 -
Cmu02g0661 1479 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 811 850 IPR000387 GO:0016311(InterPro)
Cmu02g0661 1479 SMART GRAN_2 395 452 IPR000118 -
Cmu02g0661 1479 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 331 350 IPR025661 -
Cmu02g0661 1479 ProSiteProfiles Phosphatase tensin-type domain profile. 697 876 IPR029023 -
Cmu02g0661 1479 SMART Inhibitor_I29_2 69 125 IPR013201 -
Cmu02g0661 1479 MobiDBLite consensus disorder prediction 1066 1106 - -
Cmu02g0661 1479 MobiDBLite consensus disorder prediction 1009 1042 - -
Cmu02g0661 1479 MobiDBLite consensus disorder prediction 1006 1142 - -
Cmu02g0661 1479 PRINTS Papain cysteine protease (C1) family signature 331 337 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cmu02g0661 1479 PRINTS Papain cysteine protease (C1) family signature 316 326 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cmu02g0661 1479 PRINTS Papain cysteine protease (C1) family signature 174 189 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cmu02g0661 1479 MobiDBLite consensus disorder prediction 553 599 - -
Cmu02g0661 1479 SMART C2_3c 1245 1342 IPR000008 -
Cmu02g0661 1479 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 710 878 IPR029021 -
Cmu02g0661 1479 MobiDBLite consensus disorder prediction 1442 1479 - -
Cmu02g0661 1479 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 682 879 - -
Cmu02g0661 1479 CDD Peptidase_C1A 157 371 IPR039417 -
Cmu02g0661 1479 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1249 1374 IPR035892 -
Cmu02g0661 1479 ProSitePatterns Tyrosine specific protein phosphatases active site. 813 823 IPR016130 GO:0016311(InterPro)
Cmu02g0661 1479 Pfam C2 domain 1249 1341 IPR000008 -
Cmu02g0661 1479 FunFam Cysteine protease 1 51 374 - -
Cmu02g0661 1479 SMART pept_c1 156 372 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cmu02g0661 1479 FunFam Cysteine protease 1 392 455 - -
Cmu02g0661 1479 Pfam Granulin 406 453 IPR000118 -
Cmu02g0661 1479 CDD PTP_PTEN 707 872 IPR045101 GO:0016791(InterPro)
Cmu02g0661 1479 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 684 1102 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Cmu02g0661 1479 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 174 185 IPR000169 -
Cmu02g0661 1479 Gene3D Protein tyrosine phosphatase superfamily 682 879 IPR029021 -
Cmu02g0661 1479 SMART PTEN_C2_2 881 1009 IPR014020 -
Cmu02g0661 1479 SUPERFAMILY Granulin repeat 392 426 - -
Cmu02g0661 1479 Pfam Papain family cysteine protease 156 372 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cmu02g0661 1479 ProSiteProfiles C2 tensin-type domain profile. 883 1010 IPR014020 -
Cmu02g0661 1479 CDD C2 1249 1343 - -
Cmu02g0661 1479 Gene3D C2 domain 1248 1364 IPR035892 -
Cmu02g0661 1479 SUPERFAMILY Cysteine proteinases 61 372 IPR038765 -
Cmu02g0661 1479 MobiDBLite consensus disorder prediction 1043 1065 - -
Cmu02g0661 1479 Pfam Cathepsin propeptide inhibitor domain (I29) 69 125 IPR013201 -
Cmu02g0661 1479 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 314 324 IPR025660 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1652 Cmu-Chr1:30256135 Cmu02g0661 Cmu-Chr2:6551902 1.10E-134 dispersed
Cmu01g1654 Cmu-Chr1:30274497 Cmu02g0661 Cmu-Chr2:6551902 3.50E-205 dispersed
Cmu02g0330 Cmu-Chr2:3040417 Cmu02g0661 Cmu-Chr2:6551902 2.50E-103 dispersed
Cmu02g0661 Cmu-Chr2:6551902 Cmu08g1409 Cmu-Chr8:26243975 5.30E-110 dispersed
Cmu02g0661 Cmu-Chr2:6551902 Cmu05g2082 Cmu-Chr5:30442014 1.40E-139 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0661 K01110 - csv:101222304 1129.01