Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0699 ATGGCAACCTTCACCTCTTCTCTCTCGCTCCCTCTCCAATTCCATCGCTTATCTCGCTCTCGCCGCCAATTTTCTTCACCTCCTCTTCCTCCTTCCGCCAATTTCACCTTCCGATTCTCAGCCCTAACTATCTCCTCCTCCTCCTCCTTGCACTCCGCCTCCGACAATTTTGATCATGCCAACCACTCGCACTCGCGTTTTTCATCCAAGAAACTAGTTCTTTCATCTTTGATACAAGAGATAGAGCCGTTAGATGTAAGCGTAATCCAGAAAGATGTTCCACCTACCACTGTGGATGCTATGAAAAGGACTATCTCAGGCATGCTGGGGTTACTTCCATCTGACCAGTTTCAAGTTTTAGTTGAGGCTTTATGGGAACCAGTATCTAAGTTATTAGTTTCTTCAATAATGACCGGGTACACATTGCGTAATGCTGAATATAGACTCTGCCTTGAAAGAAATCTCGACTTTGATGATGGAAATAAGGACAAACAATCAAATGATAATTGTAGAGTTAACCTACATGAAATGTTGCTTGACAGTGCAAATTTAGCAAATGTTTCAGATGAAAACGAGTCTTCTTCCAATTTTGAGGAATCGTTGGACAAATCATCAGAAAGCATTAATATTCAAGGCATTGGCGAAACTTCTCCTGAAGTTCAACAACATATTCTTCATTTGCAGTTCCAATTATCTTCAATTAAAAAGGAACTCCATGAGGTAAAGAGGAAAAGTGAAGCTCTTCAGATGCAACAGTTTGTTGGTGAGGAGAAAAATGATCTTTTGGACTATCTGAGATCATTACAGCCAGAAAAGGTGGCTGAGTTGTCCGAACCTACATCCCCTGATTTAAAAGAAGCCATACATTCTGTTGTCCATGGACTTCTTGCGACCCTTTCCCCAAAGGTTCATTCCAAAGTTCCTTCTCAATCAGAAAATATTGGAACAAGCACAACAAATATTGGTAATGAAGACTGTGCAGAACTTGTTGAGAATACTTCTCTCCAATTCGAGCCTCTCTTAACATTAACTCGAGACTATCTGGCTCGTCTACTTTTCTGGTGCATGCTGTTGGGGCATTACCTGAGAGGCTTGGAATACAGAATGGAGCTGATGAATCTTCTTTCCCTTTCAAGCAATAGGGTGGCAGTGACAGAGTTTAAAAGGGGGGAAGGTATCCTCTGGAAGTATATATACAGCTTTCAAATAAAGTGTCTTTTTTTGGGTCCCAATGGCATCATCTACAACTTCTATGGCTTCCTGGCCTCCTCCATGTACAACGTAATTTTACTGAATTTGCTTTTCCAAATTGAATTTCGGTGGGTCACACACAAGACATCGAGTCGTGACTTCCAAGGTGGCCATCAAGTGCTACGGAGCTGCTTCTACAATCTTTCTCCACCACCCAATGAGTTGATCTTGCTTAGAATAGCACAAAATTGCTTTGAGCTGGCAAGAAATCAAGCTGGTTGCTGTATACTCCAAGAGTGCATTGAATATTCCAATGATAAATTAAGACAACTTCGAGAAGTCCTCATATCCCCGTTGATACAAGATGTAGATAATCTTTCAATACATCCTTACGGGAATTATGTAATTCAATATATGATTCAATTGGATGGAGCAAACATAGGATGGAGGATAATCAATGAACTTAAAAACAAATTTGTCGCACTTTCTATGGACAAGTTTGGAAGCAATGTGGTGGAAAAATGTCTATCTTGTTGTGAAGGTGGCTTTGACTATATTATCTATGAAATTTTAGAGAATAACAATGAAAATCAACTCCTTCAAATTTGTACAAATCAATATGGCAATTATGTTGTCCAGACAGCCATGTCGGTGGCTAAGGGAGAAGCTTATAAGTTACTTGGAAGAGGCATTAAAAGCCATTGGTTTTATCTTCAATCTCATCCGTATGGAAAAAATGTGATTCCATCAACCAAATTACGTGGTAAAAAGAAGTCAAAATTACAAGAATTTTAA 1986 39.68 MATFTSSLSLPLQFHRLSRSRRQFSSPPLPPSANFTFRFSALTISSSSSLHSASDNFDHANHSHSRFSSKKLVLSSLIQEIEPLDVSVIQKDVPPTTVDAMKRTISGMLGLLPSDQFQVLVEALWEPVSKLLVSSIMTGYTLRNAEYRLCLERNLDFDDGNKDKQSNDNCRVNLHEMLLDSANLANVSDENESSSNFEESLDKSSESINIQGIGETSPEVQQHILHLQFQLSSIKKELHEVKRKSEALQMQQFVGEEKNDLLDYLRSLQPEKVAELSEPTSPDLKEAIHSVVHGLLATLSPKVHSKVPSQSENIGTSTTNIGNEDCAELVENTSLQFEPLLTLTRDYLARLLFWCMLLGHYLRGLEYRMELMNLLSLSSNRVAVTEFKRGEGILWKYIYSFQIKCLFLGPNGIIYNFYGFLASSMYNVILLNLLFQIEFRWVTHKTSSRDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIEYSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVALSMDKFGSNVVEKCLSCCEGGFDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSVAKGEAYKLLGRGIKSHWFYLQSHPYGKNVIPSTKLRGKKKSKLQEF 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7138634 7148893 + CmPI595203_02g006990.1 Cmu02g0699 408748

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0699 661 ProSiteProfiles Pumilio RNA-binding repeat profile. 551 573 IPR001313 GO:0003723(InterPro)
Cmu02g0699 661 Gene3D - 434 648 IPR011989 -
Cmu02g0699 661 ProSiteProfiles Pumilio RNA-binding repeat profile. 476 514 IPR001313 GO:0003723(InterPro)
Cmu02g0699 661 SUPERFAMILY ARM repeat 452 645 IPR016024 -
Cmu02g0699 661 Coils Coil 231 251 - -
Cmu02g0699 661 ProSiteProfiles Pumilio RNA-binding repeat profile. 515 550 IPR001313 GO:0003723(InterPro)
Cmu02g0699 661 Pfam Protein of unknown function (DUF760) 74 155 IPR008479 -
Cmu02g0699 661 Pfam Protein of unknown function (DUF760) 260 375 IPR008479 -
Cmu02g0699 661 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 310 652 IPR033133 GO:0003723(InterPro)
Cmu02g0699 661 ProSiteProfiles Pumilio RNA-binding repeat profile. 586 626 IPR001313 GO:0003723(InterPro)
Cmu02g0699 661 Pfam Pumilio-family RNA binding repeat 480 507 IPR001313 GO:0003723(InterPro)
Cmu02g0699 661 Pfam Pumilio-family RNA binding repeat 522 538 IPR001313 GO:0003723(InterPro)
Cmu02g0699 661 Pfam Pumilio-family RNA binding repeat 556 578 IPR001313 GO:0003723(InterPro)
Cmu02g0699 661 Pfam Pumilio-family RNA binding repeat 596 619 IPR001313 GO:0003723(InterPro)
Cmu02g0699 661 SMART pum_5 591 625 IPR001313 GO:0003723(InterPro)
Cmu02g0699 661 SMART pum_5 515 550 IPR001313 GO:0003723(InterPro)
Cmu02g0699 661 SMART pum_5 551 586 IPR001313 GO:0003723(InterPro)
Cmu02g0699 661 SMART pum_5 476 511 IPR001313 GO:0003723(InterPro)
Cmu02g0699 661 PANTHER OS02G0833400 PROTEIN 42 379 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0699 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0699 Cmu-Chr2:7138634 Cmu10g2224 Cmu-Chr10:28370838 4.40E-40 dispersed
Cmu02g0699 Cmu-Chr2:7138634 Cmu02g0703 Cmu-Chr2:7215178 7.10E-115 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g661 . . . . . Bpe12g00302 . . . Cmo11g01400 . . . . Sed06g0592 Cpe04g00310 . Bhi05g01055 Tan02g0996 Cmetu04g1635 Lac12g0194 . . . Cla02g00660 Cam02g0695 Cec02g0708 Cco02g0727 Clacu02g0701 Cmu02g0699 Cre02g1014 . . . . Lsi03g00555 Csa07g00704 . Cme01g00102 . . Bda15g00839 . . . . Bma08g00458 . . . Cma11g01715 . Car11g01126 . . . . . . . . . . . . . . . . . . . Chy01g00110 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009529 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 33