Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu02g0719 | ATGGAGCAACTCAATGGAAGCTTCACAGCTGATGATCAAGAAGAAGAAGCAACTTTCATGGCTCAATTACTCTTCAACACCACAAATTCCCCTGACCCTTTCATGGCTGCCCTTCCCTTTGAAACACCTTCTTCTTCAACCTTTTATAGCCTTTCTCAACAGACTAGTAATGGAAGTTATTGCAGCCAATTATTATTCCCAACTGAAAATAATAATAATTATTATTATTCTTGCAATCCCATGAATAATAATAATAATAATAATAATAATAATAATAATAATTCTTCATTGGGTGAGCTTGGAGATTATTACAATAACAATGGTGGTCATTTCCACACTGAAGATTATGAGGACTCTATGAATCTAGAGGTGAGTGAGAATAATTTTCAGCCTTGTCTTGAAGAAGCTGCCCATAACCAACTTGAGATCAATTGCAAGAAAAGATCAAGGGGAGGATTTGGGGATCATGTAGAGAAGGGGAGGAATGAGAGGCCAAAGAAAACTCAAAGGCTTATTACCTCAAGCAGCAACACTGAAGAAGATGGCAATGCTGGCCCTAGCAGGCAAAGCACAAGCAACTATTGCTCGGAAGACGAATCCAACACCTCTCTCGATCGAAACGGAGGAGCTAATAACTCGAGATCGAGTCCAAATGGTCCTACCAAATCGCGAGCCAGCAGAGGCTCAGCCACAGATCCACAGAGCCTCTATGCAAGAAAAAGAAGAGAAAGAATCAATGAGAGGTTGAGAATCTTACAGAATCTTGTCCCAAATGGAACAAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTCTACAACTCCAAATCAAGCTATTAAGCTCTGATGATTTATGGATGTACGCTCCGATCGCTTACAACGGAATGGATATCGGACTTAATCCGACCACCCCGAAAACACCAAAAGAGAAAGAATTATGA | 957 | 40.13 | MEQLNGSFTADDQEEEATFMAQLLFNTTNSPDPFMAALPFETPSSSTFYSLSQQTSNGSYCSQLLFPTENNNNYYYSCNPMNNNNNNNNNNNNNSSLGELGDYYNNNGGHFHTEDYEDSMNLEVSENNFQPCLEEAAHNQLEINCKKRSRGGFGDHVEKGRNERPKKTQRLITSSSNTEEDGNAGPSRQSTSNYCSEDESNTSLDRNGGANNSRSSPNGPTKSRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNPTTPKTPKEKEL | 318 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 7388562 | 7390731 | + | CmPI595203_02g007190.1 | Cmu02g0719 | 408768 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu02g0719 | 318 | FunFam | Basic helix-loop-helix transcription factor | 230 | 287 | - | - | |
Cmu02g0719 | 318 | MobiDBLite | consensus disorder prediction | 148 | 168 | - | - | |
Cmu02g0719 | 318 | Gene3D | - | 228 | 286 | IPR036638 | GO:0046983(InterPro) | |
Cmu02g0719 | 318 | MobiDBLite | consensus disorder prediction | 148 | 242 | - | - | |
Cmu02g0719 | 318 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 229 | 295 | IPR036638 | GO:0046983(InterPro) | |
Cmu02g0719 | 318 | CDD | bHLH_AtIND_like | 230 | 292 | - | - | |
Cmu02g0719 | 318 | SMART | finulus | 235 | 284 | IPR011598 | GO:0046983(InterPro) | |
Cmu02g0719 | 318 | MobiDBLite | consensus disorder prediction | 169 | 233 | - | - | |
Cmu02g0719 | 318 | Pfam | Helix-loop-helix DNA-binding domain | 239 | 279 | IPR011598 | GO:0046983(InterPro) | |
Cmu02g0719 | 318 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 229 | 278 | IPR011598 | GO:0046983(InterPro) | |
Cmu02g0719 | 318 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 53 | 298 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu02g0719 | Cmu-Chr2:7388562 | Cmu05g2113 | Cmu-Chr5:30658726 | 8.30E-37 | dispersed | |
Cmu10g1823 | Cmu-Chr10:22880395 | Cmu02g0719 | Cmu-Chr2:7388562 | 1.10E-45 | wgd | |
Cmu02g0719 | Cmu-Chr2:7388562 | Cmu08g1581 | Cmu-Chr8:27534667 | 5.40E-36 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5716 | PF00010 | HLH | 1.20E-08 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu02g0719 | - | - | - | 0.0 |