Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0719 ATGGAGCAACTCAATGGAAGCTTCACAGCTGATGATCAAGAAGAAGAAGCAACTTTCATGGCTCAATTACTCTTCAACACCACAAATTCCCCTGACCCTTTCATGGCTGCCCTTCCCTTTGAAACACCTTCTTCTTCAACCTTTTATAGCCTTTCTCAACAGACTAGTAATGGAAGTTATTGCAGCCAATTATTATTCCCAACTGAAAATAATAATAATTATTATTATTCTTGCAATCCCATGAATAATAATAATAATAATAATAATAATAATAATAATAATTCTTCATTGGGTGAGCTTGGAGATTATTACAATAACAATGGTGGTCATTTCCACACTGAAGATTATGAGGACTCTATGAATCTAGAGGTGAGTGAGAATAATTTTCAGCCTTGTCTTGAAGAAGCTGCCCATAACCAACTTGAGATCAATTGCAAGAAAAGATCAAGGGGAGGATTTGGGGATCATGTAGAGAAGGGGAGGAATGAGAGGCCAAAGAAAACTCAAAGGCTTATTACCTCAAGCAGCAACACTGAAGAAGATGGCAATGCTGGCCCTAGCAGGCAAAGCACAAGCAACTATTGCTCGGAAGACGAATCCAACACCTCTCTCGATCGAAACGGAGGAGCTAATAACTCGAGATCGAGTCCAAATGGTCCTACCAAATCGCGAGCCAGCAGAGGCTCAGCCACAGATCCACAGAGCCTCTATGCAAGAAAAAGAAGAGAAAGAATCAATGAGAGGTTGAGAATCTTACAGAATCTTGTCCCAAATGGAACAAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTCTACAACTCCAAATCAAGCTATTAAGCTCTGATGATTTATGGATGTACGCTCCGATCGCTTACAACGGAATGGATATCGGACTTAATCCGACCACCCCGAAAACACCAAAAGAGAAAGAATTATGA 957 40.13 MEQLNGSFTADDQEEEATFMAQLLFNTTNSPDPFMAALPFETPSSSTFYSLSQQTSNGSYCSQLLFPTENNNNYYYSCNPMNNNNNNNNNNNNNSSLGELGDYYNNNGGHFHTEDYEDSMNLEVSENNFQPCLEEAAHNQLEINCKKRSRGGFGDHVEKGRNERPKKTQRLITSSSNTEEDGNAGPSRQSTSNYCSEDESNTSLDRNGGANNSRSSPNGPTKSRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNPTTPKTPKEKEL 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7388562 7390731 + CmPI595203_02g007190.1 Cmu02g0719 408768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0719 318 FunFam Basic helix-loop-helix transcription factor 230 287 - -
Cmu02g0719 318 MobiDBLite consensus disorder prediction 148 168 - -
Cmu02g0719 318 Gene3D - 228 286 IPR036638 GO:0046983(InterPro)
Cmu02g0719 318 MobiDBLite consensus disorder prediction 148 242 - -
Cmu02g0719 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 229 295 IPR036638 GO:0046983(InterPro)
Cmu02g0719 318 CDD bHLH_AtIND_like 230 292 - -
Cmu02g0719 318 SMART finulus 235 284 IPR011598 GO:0046983(InterPro)
Cmu02g0719 318 MobiDBLite consensus disorder prediction 169 233 - -
Cmu02g0719 318 Pfam Helix-loop-helix DNA-binding domain 239 279 IPR011598 GO:0046983(InterPro)
Cmu02g0719 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 229 278 IPR011598 GO:0046983(InterPro)
Cmu02g0719 318 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 53 298 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0719 Cmu-Chr2:7388562 Cmu05g2113 Cmu-Chr5:30658726 8.30E-37 dispersed
Cmu10g1823 Cmu-Chr10:22880395 Cmu02g0719 Cmu-Chr2:7388562 1.10E-45 wgd
Cmu02g0719 Cmu-Chr2:7388562 Cmu08g1581 Cmu-Chr8:27534667 5.40E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5716 PF00010 HLH 1.20E-08 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0719 - - - 0.0