Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0727 ATGGGTCTGTGGGAAGCTTTTCTCAATTGGCTTCGAAGTCTCTTTTTCAAGCAAGAGATGGAATTATCTTTGATTGGGCTTCAGAATGCTGGAAAAACATCGCTTGTAAATGTTATTGCAACTGGTGGATACAGTGAAGACATGATCCCAACGGTAGGATTTAACATGAAGAAGGTGACAAAAGGAAATGTAACAATAAAGCTTTGGGATCTTGGAGGCCAACCAAGGTTCCGTAGTATGTGGGAAAGATATTGTCGTGCAGTTTCTGCGATTGTATATGTTGTGGATGCTGCTGATTACGAGAACTTGTCTGTCTCAAGAAGTGAACTTCATGACTTGTTGAGTAAGCCTTCACTTAATGGAATCCCATTGCTGGTATTGGGTAACAAGATTGACAAACAGGGAGCTCTGTCTAAGCCGGATCTCACAGAACGAATGGGACTCAAGTCTATAACTGATAGAGAAGTCTGTTGCTTTATGATTTCTTGCAAGAACTCAACCAATATTGACACTGTTATTGATTGGCTCGTTCCAACCATATTGTCTCACTCAGCCAAGCCCTGTTTGGAATAG 573 41.36 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMKKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYENLSVSRSELHDLLSKPSLNGIPLLVLGNKIDKQGALSKPDLTERMGLKSITDREVCCFMISCKNSTNIDTVIDWLVPTILSHSAKPCLE 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7495202 7498151 + CmPI595203_02g007270.1 Cmu02g0727 408776

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0727 190 SMART arf_sub_2 1 184 - -
Cmu02g0727 190 Pfam ADP-ribosylation factor family 9 179 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu02g0727 190 ProSiteProfiles small GTPase Arf family profile. 13 180 - -
Cmu02g0727 190 SMART sar_sub_1 4 180 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu02g0727 190 ProSiteProfiles small GTPase Rab1 family profile. 15 190 - -
Cmu02g0727 190 Gene3D - 1 178 IPR027417 -
Cmu02g0727 190 FunFam ADP-ribosylation factor-like protein 8a 1 182 - -
Cmu02g0727 190 PRINTS GTP-binding SAR1 protein signature 77 102 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu02g0727 190 PRINTS GTP-binding SAR1 protein signature 21 44 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu02g0727 190 PRINTS GTP-binding SAR1 protein signature 122 143 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu02g0727 190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 184 IPR027417 -
Cmu02g0727 190 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8 1 178 - -
Cmu02g0727 190 SMART rab_sub_5 20 183 - -
Cmu02g0727 190 NCBIfam small GTP-binding protein domain 18 175 IPR005225 GO:0005525(InterPro)
Cmu02g0727 190 CDD Arl10_like 21 177 IPR044154 GO:0003924(InterPro)|GO:0005525(InterPro)|GO:0015031(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0727 K07955 - - csv:101214940 355.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0849 Cmu-Chr1:10171737 Cmu02g0727 Cmu-Chr2:7495202 2.10E-77 dispersed
Cmu02g0727 Cmu-Chr2:7495202 Cmu11g1256 Cmu-Chr11:24540576 1.00E-26 dispersed
Cmu02g0727 Cmu-Chr2:7495202 Cmu10g2167 Cmu-Chr10:27731276 9.70E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g718 . . . Bda08g00681 . . . . Cmo19g00562 Cmo11g01421 . . . . . Cpe04g00328 Cpe15g00435 . . . . . . . Cla02g00686 Cam02g0719 Cec02g0732 Cco02g0754 Clacu02g0729 Cmu02g0727 Cre02g1038 . Cone8ag1075 . Cone10ag1049 Lsi03g00582 Csa07g00680 . Cme01g00124 . . . . . . . . . . . Cma11g01699 Cma19g00548 Car11g01144 Car19g00406 . . . . . . . . . . . . . . . . . . Chy01g00134 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000951 4 4 4 7 6 2 3 2 2 2 1 2 2 2 2 2 2 5 3 2 2 3 2 2 2 1 2 5 4 2 84