Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cmu02g0763	ATGGACAAATCATCTATGGTGGTTTTTTCTGAGATGGGAATGGAGGATAATGGGTTTGTCAATCAGTGGCACAAGAGCTCAATGGATGAGCTTGGTATGCTCCCATTAGCAGCTACTTTTGGGGAGAATTTGCAGCATTCTTATGCTCAAACAAATATCGACCAGAAGGCTTCTTTAAACCATTCTCACAATGCCATACTTGGGTATGTGAAACAGCTCAAAAGCGATGGGTGGAGTTCATACCAGACAACTAATCATTTGCCAAACTCGCAAGTTATTGCGTATCCGACCGCATCTGTTTCAGCTTCCAACTACACAAACCAAATGGACTTCACGAGGCCAAAAGAGGAAGTTGTGTGTCCTCAGAGTATTAGCAACCTCCCTTCTGATATGTTGGTTTCTCAGGGCTCATTAGCCTACCAAAGCCATGTAACCAAGTCGAATCGTGGAACAAGAAGTCCCTCTACGAACAGTAGAATCCCCCAGGCTCAAGATCACATTCTTGCAGAGCGGAGACGGCGAGAGAAGCTCAGTCAGCGGTTTATCGCTTTATCTGCTATAGTTCCTGGCCTAAAGAAGATGGACAAGGCTTCGGTTCTTGGAGATGCCATTAAGTACCTGAAACAACTCCAAGAGAAAGTGAAGATACTTGAGGAACAAACCCGGAGGAAAGACATCGAATCTGTTGTATTCGTCAAGAAATCCCAAGTTTTTGCTGATGGAAACAACACATCAAAAGAGGAGGATGAGCCCCTTCCCGAGATTGAAGCAAGATTTTGTGACAAAAATGTCCTTATAAGAATACACTGTGAGAAAAAGAAAGATGTCTTAGAGAAAACAATTGCTGAAATTGAAAAGTTGCACCTTACAATAGTCAACAGCAGTGTTATGTCATTTGGGAGTCTTGCTCTCGACATAACTATTATTGCGCAGATGGATAATGAATTCTGTCTGACGTTAAAGGACCTCGTGAAGAAGTTACAGTCGACTTTGCGCTCGTTTTAA	1005	42.79	MDKSSMVVFSEMGMEDNGFVNQWHKSSMDELGMLPLAATFGENLQHSYAQTNIDQKASLNHSHNAILGYVKQLKSDGWSSYQTTNHLPNSQVIAYPTASVSASNYTNQMDFTRPKEEVVCPQSISNLPSDMLVSQGSLAYQSHVTKSNRGTRSPSTNSRIPQAQDHILAERRRREKLSQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEKVKILEEQTRRKDIESVVFVKKSQVFADGNNTSKEEDEPLPEIEARFCDKNVLIRIHCEKKKDVLEKTIAEIEKLHLTIVNSSVMSFGSLALDITIIAQMDNEFCLTLKDLVKKLQSTLRSF	334

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
2	8419685	8421319	+	CmPI595203_02g007630.1	Cmu02g0763	408812

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cmu02g0763	334	Coils	Coil	200	227	-	-
	Cmu02g0763	334	Gene3D	-	160	233	IPR036638	GO:0046983(InterPro)
	Cmu02g0763	334	MobiDBLite	consensus disorder prediction	144	163	-	-
	Cmu02g0763	334	SMART	finulus	167	216	IPR011598	GO:0046983(InterPro)
	Cmu02g0763	334	PANTHER	BHLH TRANSCRIPTION FACTOR	11	332	IPR052610	-
	Cmu02g0763	334	MobiDBLite	consensus disorder prediction	144	165	-	-
	Cmu02g0763	334	CDD	bHLH_AtNAI1_like	163	235	-	-
	Cmu02g0763	334	Pfam	Helix-loop-helix DNA-binding domain	165	211	IPR011598	GO:0046983(InterPro)
	Cmu02g0763	334	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	161	210	IPR011598	GO:0046983(InterPro)
	Cmu02g0763	334	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	166	223	IPR036638	GO:0046983(InterPro)

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cmu01g1749	Cmu-Chr1:31200320	Cmu02g0763	Cmu-Chr2:8419685	9.90E-45	dispersed
	Cmu02g0763	Cmu-Chr2:8419685	Cmu05g0083	Cmu-Chr5:824216	5.00E-16	dispersed
	Cmu02g0763	Cmu-Chr2:8419685	Cmu01g1750	Cmu-Chr1:31220515	9.90E-41	transposed

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	5718	PF00010	HLH	2.40E-10	No_clan	Cmu	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cmu02g0763	-		-	-	0.0