Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0769 ATGGACACTCTCTTTGTCCCCATATCCTTCTCCGAACCTCCTCGTCCTTCACTCACCCGCAACACCAACGCCGGTGCTCAATCGAGGATTGGACCTGTTTCCCGCTTCTCGCCGCGTTCTTCTCTAATTCGGCTCAAGCCCTTTCCCATTCCCTGTAAGAAGCTTTCCTCTCCTCGCTTCGGTCACTTCCGTTGCGCCGCCGACGCCTCCAGTCACCCACACGGTCACCATCACGGCCATCATCACCACCACCATGGCTGCCAGCACCATTGCAGTCGTGACGGTAATGGAGTGGAGCTGACTGGGGCTCAGAAGGCGTTTGTTCGATTTGCCGAAGCTATTAGGTGGACGGACTTGGCGAATTTTTTGAGGGAGCATCTACATTTGTGTTGCGGTTCTGCTGCTTTGTTTGTGACTGCAGCTGCGTGCCCTTATTTGGTGCCAAAACCTGCTGTGAAGCCTCTACAGAATGTTTTCATTGCAGTTGCTTTCCCTTTAGTCGGGGTCTCTGCTTCTCTTGATGCTCTTACTGATATTAGTGGTGGGAAAGTAAACATCCATGTACTAATGGCTCTTGCAGCCTTTGCATCAATTTTTATGGGGAACCCCTTGGAAGGAGGACTACTTCTTGTGATGTTTAATATGGCTCATATTGCTGAAGAGTATTTCACAAAGCAATCAATGATTGATGTTAAAGAGTTGAAGGAAAGTCATCCAGATTTTGCTCTTGTTCTTGATGTGAATGATGATAACCTTCCCGATACTTCAGATCTGGAGCATAGAAGGGTGCCAGTGCGTGATGTTGAAGTGGGCTCATATATCTTGGTGGGAGCTGGTGAGTCTGTCCCTGTAGATTGTGAAGTTTATCAAGGCTGTGCTACGATCACTGTTGAGCACTTGACAGGAGAAGTTAAACCATTGCAAATTAAGGTTGGGGAAAGAGTTCCAGGTGGAGCAAGAAATCTGGACGGTAGGATCATAGTGAAGGCTACAAAAACATGGGAAGAGTCAACACTTAGCAGGATTGTGCAGTTGACTGAAGAAGCACAACTTAATAAACCAAAGCTACAGAGGTGGCTCGATGAATTTGGTGAGAATTACAGCAAGGTTGTTGTAGTCTTATCCGTAGCGGTTGCACTCATTGGACCATTATTGTTCAAGTGGCCATTTATATGCACACCAGGTTTCAGAGGATCGGTTTATAGAGCACTTGGACTCATGGTAGCCGCATCACCATGTGCACTGGCAGCAGCACCTTTGGCATATGCTATCGCAATAAGTTCCTGTGCAAGAAAGGGGATACTCCTGAAAGGTGGACACGTCCTTGATGCTATGGCTTCTTGTCACACTGTTGCATTTGATAAAACGGGAACATTGACTACAGGAGGACTTGTGTTTAAAGCCATAGAACCCATTTATGGGCATAAGATTGGAGGGGATAAATCACATTTTGCTTCCTGTTGCATACCGAGCTGCGAAAAAGAAGCCCTTGCTGTGGCAGCTGCCATGGAAAAGGGTACTACTCACCCAATTGGAAGAGCTGTAGTAGATCATAGTGTGGGGAAAGACCTTCCTTCTATTTCTGTTGAAAGTTTTGAATATTTCCCTGGAAGAGGTCTCATTGCAACTCTGCATGGCATTAAGTCAGGAATTGGAGGTAAATTGCGGAAAGCATCTCTTGGTTCTGTGGATTTCATCACTTCCTTCTGCAAATCCGAAAATGAATCAAGGAAGATCAAGGACGCAGTTAGAGCATCATCATATGGAAGTGAATTTGTTCATGCTGCTCTTTCAGTTGATCAAAAGGTAACACTAATTCACCTTGAGGATCAACCACGACCTGGAGTCTTAGATGCCATAGCAGAACTAAAAGATCAGGGAAAACTCCGAGTTATGATGCTAACAGGTGATCATGATTCAAGTGCATGGAAAGTTGCGAATGCTGTAGGCATAAATGAAGTGTACTACAGTCTTAAGCCAGAGGACAAACTTGCTCACGTGAAGGAAATTTCAAGGGAGATGGGGGGTGGTCTGATCATGGTAGGCGAAGGTATAAACGATGCACCTGCACTTGCTGCTGCTACTGTGGGAATAGTTCTTGCCCACCGTGCAAGCGCTACTGCTACAGCTGTTGCAGACGTCCTGCTTCTTCAGGACAGTATTTCCGGCATTCCATTCTGCATTGCCAAATCTCGTCAGACCACTTCACTGGTCAAGCAAAATGTGACCCTTGCCTTGTCATCTATCCTTCTAGCCTCTCTCCCATCCGTTTTGGGGTTTCTTCCCTTGTGGCTAACGGTCCTTCTACATGAGGGTGGCACTCTCCTGGTTTGCTTGAACTCCGTACGTGCTCTAAATCAGCCCTCGTGGTCGTGGAAACAAGATTTTCAAAATCTGATACATGACGTCAGATCTAAACTCAATACGACACCCGAAACTAGCTCTGGACCATCCAAACTGCAACTTCATAGCATAAACTTCTCTCTCCTAGGTAAGCCATAA 2502 46.36 MDTLFVPISFSEPPRPSLTRNTNAGAQSRIGPVSRFSPRSSLIRLKPFPIPCKKLSSPRFGHFRCAADASSHPHGHHHGHHHHHHGCQHHCSRDGNGVELTGAQKAFVRFAEAIRWTDLANFLREHLHLCCGSAALFVTAAACPYLVPKPAVKPLQNVFIAVAFPLVGVSASLDALTDISGGKVNIHVLMALAAFASIFMGNPLEGGLLLVMFNMAHIAEEYFTKQSMIDVKELKESHPDFALVLDVNDDNLPDTSDLEHRRVPVRDVEVGSYILVGAGESVPVDCEVYQGCATITVEHLTGEVKPLQIKVGERVPGGARNLDGRIIVKATKTWEESTLSRIVQLTEEAQLNKPKLQRWLDEFGENYSKVVVVLSVAVALIGPLLFKWPFICTPGFRGSVYRALGLMVAASPCALAAAPLAYAIAISSCARKGILLKGGHVLDAMASCHTVAFDKTGTLTTGGLVFKAIEPIYGHKIGGDKSHFASCCIPSCEKEALAVAAAMEKGTTHPIGRAVVDHSVGKDLPSISVESFEYFPGRGLIATLHGIKSGIGGKLRKASLGSVDFITSFCKSENESRKIKDAVRASSYGSEFVHAALSVDQKVTLIHLEDQPRPGVLDAIAELKDQGKLRVMMLTGDHDSSAWKVANAVGINEVYYSLKPEDKLAHVKEISREMGGGLIMVGEGINDAPALAAATVGIVLAHRASATATAVADVLLLQDSISGIPFCIAKSRQTTSLVKQNVTLALSSILLASLPSVLGFLPLWLTVLLHEGGTLLVCLNSVRALNQPSWSWKQDFQNLIHDVRSKLNTTPETSSGPSKLQLHSINFSLLGKP 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8520675 8529457 + CmPI595203_02g007690.1 Cmu02g0769 408818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0769 833 SFLD Haloacid Dehalogenase 434 734 - -
Cmu02g0769 833 Gene3D - 225 350 - -
Cmu02g0769 833 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 64 811 IPR051949 -
Cmu02g0769 833 SUPERFAMILY Calcium ATPase, transduction domain A 260 345 IPR008250 -
Cmu02g0769 833 SFLD p-type atpase 434 734 IPR044492 -
Cmu02g0769 833 CDD P-type_ATPase_HM 128 783 - -
Cmu02g0769 833 NCBIfam HAD-IC family P-type ATPase 585 761 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu02g0769 833 NCBIfam HAD-IC family P-type ATPase 261 473 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu02g0769 833 Gene3D - 445 732 IPR023214 -
Cmu02g0769 833 SUPERFAMILY HAD-like 450 781 IPR036412 -
Cmu02g0769 833 PRINTS P-type cation-transporting ATPase superfamily signature 452 466 - -
Cmu02g0769 833 PRINTS P-type cation-transporting ATPase superfamily signature 705 717 - -
Cmu02g0769 833 PRINTS P-type cation-transporting ATPase superfamily signature 627 637 - -
Cmu02g0769 833 PRINTS P-type cation-transporting ATPase superfamily signature 681 700 - -
Cmu02g0769 833 PRINTS P-type cation-transporting ATPase superfamily signature 604 615 - -
Cmu02g0769 833 SUPERFAMILY Calcium ATPase, transmembrane domain M 188 764 IPR023298 -
Cmu02g0769 833 MobiDBLite consensus disorder prediction 14 31 - -
Cmu02g0769 833 MobiDBLite consensus disorder prediction 11 31 - -
Cmu02g0769 833 ProSitePatterns E1-E2 ATPases phosphorylation site. 454 460 IPR018303 -
Cmu02g0769 833 Gene3D - 463 612 IPR023299 GO:0000166(InterPro)
Cmu02g0769 833 NCBIfam heavy metal translocating P-type ATPase 186 783 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Cmu02g0769 833 Pfam haloacid dehalogenase-like hydrolase 450 694 - -
Cmu02g0769 833 Pfam E1-E2 ATPase 259 432 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0769 Cmu-Chr2:8520675 Cmu02g0828 Cmu-Chr2:9783723 2.40E-245 dispersed
Cmu02g0769 Cmu-Chr2:8520675 Cmu06g1419 Cmu-Chr6:25414504 7.20E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0769 K01534 - csv:101221102 1452.19