Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0770 ATGATTTCCATTGCCCAAAATCCCAATGTCTCCTCCGAACTCTCCTCCTCTCCCCCGCCTTCCACCGCCACAACCCATACTTTCCGATCCAAATTTCCCGATATTACTATCCCCGACCACCTCCCTCTTCACAGTTACTGCTTTCAGAACCTCTCTGAAGTTTCCCACCGCCCCTGTTTGATCCTCGGCTCCACTGGCAAATCCTATTCCTACTCCGACACCCACCTCTTCTCCCTCAAAGCCGCCGCCACTTTCTCTAAACTTGGAGTTAAGAAAGGCGATATCATTATGATTCTTCTCCACAACTCTCCCGAATTTGTTTTCTCTTTTATGGCTTCCTCCATGCTCGGCGCCGTCGCCACCACCGCAAATCCGTACTACACGGCGGCCGAGATTTCCAAGCAGTTGAAGGCCTCCGGTGCCAAATTCGTGGTTACTTACTCCCAATGCGTCGACAAGCTCAAAGAATCCGGCGAACATCTCACCATTGTCACCGTCGATGACCCGCCAGAGAATTGTCTGAGCTTCTCGATGGTGTACGACGCCGATGTGAATGACGTACCCTCCGTGGAGATTGACACAAACGACGCCGTTTCGCTACCGTTCTCCTCTGGCACGACCGGGCTCCCGAAGGGTGTGATTTTGACTCATAAGAACATGGTGTCGAGTGTGGCTCAACAGGTGGATGGAGAGAATCCAAACTTGTATTTAAGAAGAAACGACGTAGTGCTATGCGTGTTACCAATGTTCCACATATTCTCGTTGAGTAGCATAGTTTTGATATCAATTAGGTCAGGGGCAGCGCTGCTTTTGATGGAGAAGTTCGAGATAGAGTCATTGCTAAGACTAATAGAGAGGCACGAGGTGACAGTGGCGGCGGTGGTGCCGCCGCTTGTGGTAGCGCTAGTGAAGAACCCGAGGTTGGCGGATTTTGACCTGAGCTCGATTAGATTGGTCCTTTCCGGAGCGGCGCCGCTGCGGAAGGAGCTGGAGGAGGCTCTCATGGAGAGGCTTCCTCAAGCCATTTTTGGTCAGGGTTATGGGATGACGGAAGCGGGTCCCGTGCTGAGCATGTGCTCGGCTTTTGCAAAGGAGCCACTGATGCCAACAAAATCAGGTTCTTGTGGCAGAGTAGTGAGAAACTCGGAGCTCAAAGTCATTGACCCACAAACCGGCGACTCCCTCACTTATAATCAACCTGGAGAGATTTGTGTTCGAGGTCCTCAAGTAATGAAAGGATATTTGAACGACCCGGTGTCCACGTCCTTGACTGTCGACGTGGAGGGTTGGCTTCATACCGGTGACATTGGTTACATTGACGATGAAGATGAAATTTTTATTGTTGACAGAGTCAAAGAGATCATTAAATTTAAAGGTTTTCAGGTGGCACCAGCAGAGTTAGAGGCCCTTCTTGTAACCCATCCATCTATTGTGGATGCCGCTGTTGTCCCGCAAAGTGATGATGTTGCTGGTGAAGTTCCAGTGGCTTTCGTAGTTCCATCAACTCAGGATGAACTTACTGAGGACGCAGTAAAAGAATTCATAGCAAAGCAGGTTGTGTTCTACAAGAGATTGCAGAAAGTGTATTTTGTGCAAACAATTCCAAAATCACCCTCTGGAAAGATTTTGAGAAAGGAACTCAAAACCAAGCTCTCAGTGTCACCTGGATTTTAG 1674 49.34 MISIAQNPNVSSELSSSPPPSTATTHTFRSKFPDITIPDHLPLHSYCFQNLSEVSHRPCLILGSTGKSYSYSDTHLFSLKAAATFSKLGVKKGDIIMILLHNSPEFVFSFMASSMLGAVATTANPYYTAAEISKQLKASGAKFVVTYSQCVDKLKESGEHLTIVTVDDPPENCLSFSMVYDADVNDVPSVEIDTNDAVSLPFSSGTTGLPKGVILTHKNMVSSVAQQVDGENPNLYLRRNDVVLCVLPMFHIFSLSSIVLISIRSGAALLLMEKFEIESLLRLIERHEVTVAAVVPPLVVALVKNPRLADFDLSSIRLVLSGAAPLRKELEEALMERLPQAIFGQGYGMTEAGPVLSMCSAFAKEPLMPTKSGSCGRVVRNSELKVIDPQTGDSLTYNQPGEICVRGPQVMKGYLNDPVSTSLTVDVEGWLHTGDIGYIDDEDEIFIVDRVKEIIKFKGFQVAPAELEALLVTHPSIVDAAVVPQSDDVAGEVPVAFVVPSTQDELTEDAVKEFIAKQVVFYKRLQKVYFVQTIPKSPSGKILRKELKTKLSVSPGF 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8551609 8558709 + CmPI595203_02g007700.1 Cmu02g0770 408819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0770 557 Pfam AMP-binding enzyme C-terminal domain 466 541 IPR025110 -
Cmu02g0770 557 FunFam Long-chain-fatty-acid--CoA ligase FadD 29 452 - -
Cmu02g0770 557 ProSitePatterns Putative AMP-binding domain signature. 200 211 IPR020845 -
Cmu02g0770 557 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 22 548 - GO:0016207(PANTHER)|GO:0016405(PANTHER)
Cmu02g0770 557 Gene3D - 452 553 IPR045851 -
Cmu02g0770 557 SUPERFAMILY Acetyl-CoA synthetase-like 26 550 - -
Cmu02g0770 557 CDD 4CL 37 547 - -
Cmu02g0770 557 FunFam 4-coumarate--CoA ligase 2 453 554 - -
Cmu02g0770 557 MobiDBLite consensus disorder prediction 1 25 - -
Cmu02g0770 557 Pfam AMP-binding enzyme 56 415 IPR000873 -
Cmu02g0770 557 Gene3D - 21 451 IPR042099 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2461 Cmu-Chr1:36560459 Cmu02g0770 Cmu-Chr2:8551609 6.10E-26 dispersed
Cmu02g0770 Cmu-Chr2:8551609 Cmu10g2044 Cmu-Chr10:26208718 9.60E-190 dispersed
Cmu02g0770 Cmu-Chr2:8551609 Cmu06g1391 Cmu-Chr6:25068067 4.30E-174 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0770 K01904 - csv:101221344 922.539