Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu02g0828 | ATGGTAGATTTGAGCTTCCAAAAAAATTTTGTGCCTATAGATTGTGAAGTTTTCCAAGGTAGTGCTACAGTCACCATTGAGCACCTAACCGGTGAAATCAAACCATTGGAGATTACGGTTGGAAGCAGAGTTCCTGGTGGTGCAAGAAACTTGGATGGTAGGATAATCGTGAAGGCAACAAAGACCTGGAAAGAGTCAACTTTGAGTCGTATAGTGAACTTGACTGAAGAAGCACAACTGAATAAACCAAGACTTCAGAGGTGGCTTGATGAATTTGGTGAGCATTATAGCAAAGCAGTTGTAGTATTGGCCATTGCTATTGCCCTCGTTGGTCCAATATTATTCAAGTGGCCATTTATTGGTACATCAGCTTGTAGAGGATCGGTTTACAGAGCTCTAGGCCTCATGGTGGCAGCATCACCTTGTGCTTTGGCAGTTGCACCATTGGCTTATGCTATTGCAATTAGTTCCTGTGCAAGAAAGGGGATATTGTTGAAAGGTGGGCGTGTATTAGATGCTTTAGCTTCTTGTCACACTATAGCTTTTGATAAAACTGGGACGTTGACTACTGGGGGGCTCATTTTCAAAGCGATTGAACCAATTTACGGACATGAGGTTGGAGAAAACAAATCAGACTTTGGTTCCTGTTGCATTCCCTGCTGTGAAGAAGAAGCTCTTGCTGTAGCAGCTGCCATGGAGAAGGGTACTACTCACCCCATTGGAAGAGCTGTTGTCGACCATAGTATGGGAAAAGACCTCCCATCCTTTTCTGTCCAGAATTTGGAATATTTTCCGGGTAGAGGACTTGTTGCAACTCTGCATGGTACTGAGTCGGGAACTGAAGGTGGGAAACTATTGAAAGCATCTCTTGGGTCCTTAGATTTCATCACTTCATGCTACAAATCAGAAACCAAATCAAAAGAGATCAAAGAAGCTGCGAGCACATCTTCATATGGAAGTGAGTTTGTTCATGCTGCTCTTGCAGTTGATGGGAAGGTAACACTTATTCATCTTGAGGATCGACCTCATCCTGGAGTTTCAAGTGTAATAGCTGAATTAACAGATAGGGCTAAACTCCATGTAATGATGTTGACTGGAGATCATGAGTCAAGTGCACGGAGAGTGGCAAACGCAGTGGGCATCAAGGAAGTCCACTTCAGTCTAAAGCCTGAAGACAAGCTTAGTCACGTCAAAAGTATCTCTAGGGAGAATGGAGGAGGACTAATTATGGTTGGTGAAGGCATTAATGATGCACCAGCCCTTGCTGCTGCTACCGTAGGCATAGTGCTTGCTCAACGTGCTAGTGCAACGGCTATAGCTGTGGCTGATGTTCTGTTGCTGCGGGATAACATATCTGGTGTACCATTCTGTATTGCCAAGTCTCGCCAGACGACTGCCCTAGTTAAACAGAATGCTAGTCTTGCTTTGTTTTCAATATTTGTGGCCTCTCTTCCTGCAGTTCTAGGGTTTCTTCCATTGTGGTTAACGGTACTTCTGCACGAAGGTGGTACTCTTCTCGTTTGCCTCAATTCCATACGTGCTCTGAATAATCCTAGTTGGTCCTGGAAGCAGGACTTGAAGCAATTGCTAATGGAGCTGAAATTTAAAGACTCGCAGCCTAGCCATAATGCCAGCTCTACTACTCTACAATCTTCCCCTGTATAG | 1665 | 44.32 | MVDLSFQKNFVPIDCEVFQGSATVTIEHLTGEIKPLEITVGSRVPGGARNLDGRIIVKATKTWKESTLSRIVNLTEEAQLNKPRLQRWLDEFGEHYSKAVVVLAIAIALVGPILFKWPFIGTSACRGSVYRALGLMVAASPCALAVAPLAYAIAISSCARKGILLKGGRVLDALASCHTIAFDKTGTLTTGGLIFKAIEPIYGHEVGENKSDFGSCCIPCCEEEALAVAAAMEKGTTHPIGRAVVDHSMGKDLPSFSVQNLEYFPGRGLVATLHGTESGTEGGKLLKASLGSLDFITSCYKSETKSKEIKEAASTSSYGSEFVHAALAVDGKVTLIHLEDRPHPGVSSVIAELTDRAKLHVMMLTGDHESSARRVANAVGIKEVHFSLKPEDKLSHVKSISRENGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRDNISGVPFCIAKSRQTTALVKQNASLALFSIFVASLPAVLGFLPLWLTVLLHEGGTLLVCLNSIRALNNPSWSWKQDLKQLLMELKFKDSQPSHNASSTTLQSSPV | 554 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 9783723 | 9799151 | - | CmPI595203_02g008280.1 | Cmu02g0828 | 408877 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu02g0828 | 554 | Gene3D | - | 6 | 79 | - | - | |
Cmu02g0828 | 554 | SUPERFAMILY | HAD-like | 179 | 511 | IPR036412 | - | |
Cmu02g0828 | 554 | Gene3D | - | 174 | 462 | IPR023214 | - | |
Cmu02g0828 | 554 | PRINTS | P-type cation-transporting ATPase superfamily signature | 411 | 430 | - | - | |
Cmu02g0828 | 554 | PRINTS | P-type cation-transporting ATPase superfamily signature | 435 | 447 | - | - | |
Cmu02g0828 | 554 | PRINTS | P-type cation-transporting ATPase superfamily signature | 357 | 367 | - | - | |
Cmu02g0828 | 554 | PRINTS | P-type cation-transporting ATPase superfamily signature | 181 | 195 | - | - | |
Cmu02g0828 | 554 | PANTHER | PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 | 10 | 546 | IPR051949 | - | |
Cmu02g0828 | 554 | Pfam | haloacid dehalogenase-like hydrolase | 179 | 424 | - | - | |
Cmu02g0828 | 554 | NCBIfam | HAD-IC family P-type ATPase | 8 | 204 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Cmu02g0828 | 554 | NCBIfam | HAD-IC family P-type ATPase | 316 | 491 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Cmu02g0828 | 554 | SUPERFAMILY | Calcium ATPase, transduction domain A | 9 | 74 | IPR008250 | - | |
Cmu02g0828 | 554 | SFLD | p-type atpase | 163 | 464 | IPR044492 | - | |
Cmu02g0828 | 554 | Pfam | E1-E2 ATPase | 9 | 161 | - | - | |
Cmu02g0828 | 554 | Gene3D | - | 192 | 342 | IPR023299 | GO:0000166(InterPro) | |
Cmu02g0828 | 554 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 183 | 189 | IPR018303 | - | |
Cmu02g0828 | 554 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 76 | 494 | IPR023298 | - | |
Cmu02g0828 | 554 | SFLD | Haloacid Dehalogenase | 163 | 464 | - | - | |
Cmu02g0828 | 554 | NCBIfam | heavy metal translocating P-type ATPase | 11 | 513 | IPR027256 | GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu02g0769 | Cmu-Chr2:8520675 | Cmu02g0828 | Cmu-Chr2:9783723 | 2.40E-245 | dispersed | |
Cmu02g0828 | Cmu-Chr2:9783723 | Cmu05g1614 | Cmu-Chr5:25912741 | 9.30E-44 | dispersed | |
Cmu11g1213 | Cmu-Chr11:23652328 | Cmu02g0828 | Cmu-Chr2:9783723 | 3.20E-07 | dispersed | |
Cmu02g0828 | Cmu-Chr2:9783723 | Cmu06g1419 | Cmu-Chr6:25414504 | 2.20E-45 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu02g0828 | K01534 | - | mdm:103453726 | 840.876 |