Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0828 ATGGTAGATTTGAGCTTCCAAAAAAATTTTGTGCCTATAGATTGTGAAGTTTTCCAAGGTAGTGCTACAGTCACCATTGAGCACCTAACCGGTGAAATCAAACCATTGGAGATTACGGTTGGAAGCAGAGTTCCTGGTGGTGCAAGAAACTTGGATGGTAGGATAATCGTGAAGGCAACAAAGACCTGGAAAGAGTCAACTTTGAGTCGTATAGTGAACTTGACTGAAGAAGCACAACTGAATAAACCAAGACTTCAGAGGTGGCTTGATGAATTTGGTGAGCATTATAGCAAAGCAGTTGTAGTATTGGCCATTGCTATTGCCCTCGTTGGTCCAATATTATTCAAGTGGCCATTTATTGGTACATCAGCTTGTAGAGGATCGGTTTACAGAGCTCTAGGCCTCATGGTGGCAGCATCACCTTGTGCTTTGGCAGTTGCACCATTGGCTTATGCTATTGCAATTAGTTCCTGTGCAAGAAAGGGGATATTGTTGAAAGGTGGGCGTGTATTAGATGCTTTAGCTTCTTGTCACACTATAGCTTTTGATAAAACTGGGACGTTGACTACTGGGGGGCTCATTTTCAAAGCGATTGAACCAATTTACGGACATGAGGTTGGAGAAAACAAATCAGACTTTGGTTCCTGTTGCATTCCCTGCTGTGAAGAAGAAGCTCTTGCTGTAGCAGCTGCCATGGAGAAGGGTACTACTCACCCCATTGGAAGAGCTGTTGTCGACCATAGTATGGGAAAAGACCTCCCATCCTTTTCTGTCCAGAATTTGGAATATTTTCCGGGTAGAGGACTTGTTGCAACTCTGCATGGTACTGAGTCGGGAACTGAAGGTGGGAAACTATTGAAAGCATCTCTTGGGTCCTTAGATTTCATCACTTCATGCTACAAATCAGAAACCAAATCAAAAGAGATCAAAGAAGCTGCGAGCACATCTTCATATGGAAGTGAGTTTGTTCATGCTGCTCTTGCAGTTGATGGGAAGGTAACACTTATTCATCTTGAGGATCGACCTCATCCTGGAGTTTCAAGTGTAATAGCTGAATTAACAGATAGGGCTAAACTCCATGTAATGATGTTGACTGGAGATCATGAGTCAAGTGCACGGAGAGTGGCAAACGCAGTGGGCATCAAGGAAGTCCACTTCAGTCTAAAGCCTGAAGACAAGCTTAGTCACGTCAAAAGTATCTCTAGGGAGAATGGAGGAGGACTAATTATGGTTGGTGAAGGCATTAATGATGCACCAGCCCTTGCTGCTGCTACCGTAGGCATAGTGCTTGCTCAACGTGCTAGTGCAACGGCTATAGCTGTGGCTGATGTTCTGTTGCTGCGGGATAACATATCTGGTGTACCATTCTGTATTGCCAAGTCTCGCCAGACGACTGCCCTAGTTAAACAGAATGCTAGTCTTGCTTTGTTTTCAATATTTGTGGCCTCTCTTCCTGCAGTTCTAGGGTTTCTTCCATTGTGGTTAACGGTACTTCTGCACGAAGGTGGTACTCTTCTCGTTTGCCTCAATTCCATACGTGCTCTGAATAATCCTAGTTGGTCCTGGAAGCAGGACTTGAAGCAATTGCTAATGGAGCTGAAATTTAAAGACTCGCAGCCTAGCCATAATGCCAGCTCTACTACTCTACAATCTTCCCCTGTATAG 1665 44.32 MVDLSFQKNFVPIDCEVFQGSATVTIEHLTGEIKPLEITVGSRVPGGARNLDGRIIVKATKTWKESTLSRIVNLTEEAQLNKPRLQRWLDEFGEHYSKAVVVLAIAIALVGPILFKWPFIGTSACRGSVYRALGLMVAASPCALAVAPLAYAIAISSCARKGILLKGGRVLDALASCHTIAFDKTGTLTTGGLIFKAIEPIYGHEVGENKSDFGSCCIPCCEEEALAVAAAMEKGTTHPIGRAVVDHSMGKDLPSFSVQNLEYFPGRGLVATLHGTESGTEGGKLLKASLGSLDFITSCYKSETKSKEIKEAASTSSYGSEFVHAALAVDGKVTLIHLEDRPHPGVSSVIAELTDRAKLHVMMLTGDHESSARRVANAVGIKEVHFSLKPEDKLSHVKSISRENGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRDNISGVPFCIAKSRQTTALVKQNASLALFSIFVASLPAVLGFLPLWLTVLLHEGGTLLVCLNSIRALNNPSWSWKQDLKQLLMELKFKDSQPSHNASSTTLQSSPV 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9783723 9799151 - CmPI595203_02g008280.1 Cmu02g0828 408877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0828 554 Gene3D - 6 79 - -
Cmu02g0828 554 SUPERFAMILY HAD-like 179 511 IPR036412 -
Cmu02g0828 554 Gene3D - 174 462 IPR023214 -
Cmu02g0828 554 PRINTS P-type cation-transporting ATPase superfamily signature 411 430 - -
Cmu02g0828 554 PRINTS P-type cation-transporting ATPase superfamily signature 435 447 - -
Cmu02g0828 554 PRINTS P-type cation-transporting ATPase superfamily signature 357 367 - -
Cmu02g0828 554 PRINTS P-type cation-transporting ATPase superfamily signature 181 195 - -
Cmu02g0828 554 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 10 546 IPR051949 -
Cmu02g0828 554 Pfam haloacid dehalogenase-like hydrolase 179 424 - -
Cmu02g0828 554 NCBIfam HAD-IC family P-type ATPase 8 204 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu02g0828 554 NCBIfam HAD-IC family P-type ATPase 316 491 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu02g0828 554 SUPERFAMILY Calcium ATPase, transduction domain A 9 74 IPR008250 -
Cmu02g0828 554 SFLD p-type atpase 163 464 IPR044492 -
Cmu02g0828 554 Pfam E1-E2 ATPase 9 161 - -
Cmu02g0828 554 Gene3D - 192 342 IPR023299 GO:0000166(InterPro)
Cmu02g0828 554 ProSitePatterns E1-E2 ATPases phosphorylation site. 183 189 IPR018303 -
Cmu02g0828 554 SUPERFAMILY Calcium ATPase, transmembrane domain M 76 494 IPR023298 -
Cmu02g0828 554 SFLD Haloacid Dehalogenase 163 464 - -
Cmu02g0828 554 NCBIfam heavy metal translocating P-type ATPase 11 513 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0769 Cmu-Chr2:8520675 Cmu02g0828 Cmu-Chr2:9783723 2.40E-245 dispersed
Cmu02g0828 Cmu-Chr2:9783723 Cmu05g1614 Cmu-Chr5:25912741 9.30E-44 dispersed
Cmu11g1213 Cmu-Chr11:23652328 Cmu02g0828 Cmu-Chr2:9783723 3.20E-07 dispersed
Cmu02g0828 Cmu-Chr2:9783723 Cmu06g1419 Cmu-Chr6:25414504 2.20E-45 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0828 K01534 - mdm:103453726 840.876