Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0849 ATGGTGATTCAGAGAGAAATGGAATTGAGAAGAGCTGGTTATGTGGTTGTTTTTGTGACTCTCCTTTGTGCATTGGCAATTGCCAGTTCAGAGGGCAGAAGGAAGACGGTCGAAATGGTTCTTGCCAATTCCGCCAATTGCCACTTCACATCCTCAAAGTTGGATTCAGATATGGGCCAGAAAGCATGCATGAGAGAATTAGCAGAGAAGGAATATGAAGCAGAAGAATTCGTTCCTTGCATTCATAAAAAAAACATGGGTAAAGATGCTATAAGAATTCTTCCAACTGACATGAAACATGACTTATTGGATTGTTTAAGAAAGAAAACTATGCTTACTCGTGGTTCTGAACCAAGTTCTAGCTTATTTGATCGGTTTAGCAAACCAATTGAGTTGTTCTTCAGTGGAGGGTCCGATAGTCGCATGAGACATCTAATTAGGGCATCACAAGATTCATCAGAACCACACCTTGCTGAAGCTCCAGCTCCATCTCCATCTCCATCTCCATCTCCATCTCCATCTCCTGAAGCAGAATCACCAGCAAGTTCTCCATTCCCGTCTCCCAGTCTTGCTCCAACGCCATCTCCAAGTTATGCCCCAACCAAGTCACCATATCGAAATCTCCGTCCACCTGTTGAGGCTCCAGCTCCGTCTCCAGAACCACTACCAGACGACACTGATGTTTCGGATTTGCCTACACCTTCTGTAGTTCGCTCACCACCTCCTCCACGTGCTTCTCCCAAGTCTCGCCCTCCAAAGAAGCATGAAGAAGACCAAACAGCCATAATTGCTGGTATTGTAGCAGCTGGTGTGGGAGTTGTTCTTGTGGTTGCTCTGCTTTTGTTTTGCTGTCGTAGAGGTGAGAAAAGTAAGGTAGATCCGAAGGATGGGCAAAAGGATGAGAGACCTCTCCTAAACATATCTTTGAGCGAATTATCAGCAGGTTCTTCACAGATGTCATACAGCCTTGGAAATCCAGCTACCAAAGAGGTAAATGCTGGTAATGGAACTAAACCACCCTCATTTGTTGGCAACTTATCAGTGAATCCTGAAAATGATACCTCTATGGCTGAGGGTCCAACATTTGATGGTAAATCATCAGCAATGCCGCCTCTAAAACCCCCTCCTGGAAGAACAGATTCTCAACCTCCTCCAGAACCAGCACCAACACCAGCACCAGCACCAGCGGCAGCACCAGCGGCAGCACCAGCACCGCCTCCGCCGCCTGCTCCTAGAGCCCCACCACCACCACCCCTGAAAGTTGGCCGACCCCCACCTGCACCACCGACGGCAATCCCTGGTAAATCTCAAGCAGCGCCTATGGGGCCACATCGACGTGGACCCAGTGGCTCAAGTATGGATGGGGATTCAGGAGCCCAAAAGACCAAGTTAAAGCCCTTTTTCTGGGATAAGGTTCTCGCTAACCCTGGGCAATCCATGGTCTGGCACGAGATTAGTGCTGGATCATTCCAGTTCAATGAGGAGATGATGGAGTCCTTGTTTGGATATACAGCAGTAGCAGCCAACAAAGGCGACCGCAAGAAAGATTTAGCTTTAGACCCTTCAGCACAGTTCATTCAAATCATCGACGCTAAGAAGGCTCAAAACCTTTCAATTCTCCTACGAGCATTGAATGTAACAACAGCAGAAGTTTTGGATGCCCTTGAAGAAGGAAATCCTGATCTTCCAGCAGAGCTTCTGCAGACCTTGTTGAAGATGGCACCAACGACAGAAGAGGAACTGAAACTGAGATTATTTTCAGGGGATCTTTCTCAGCTAGGTCCAGCAGAGCGATTCCTCAAAGTGTTGGTGGATGTTCCTTTTGCTTTTAAACGATTAGAGTGTCTTCTCTTCATGCTTTCAATGTCGGAAGACGTCACTAACATTAAGGAGTCATTCGCTACTCTAGAGGTCGCATGCAACAATCTTAGAAATAGCAGGCTGTTTCTCAAGCTATTAGAAGCAGTTCTCAAAACTGGAAATCGAATGAACGACGGGACGTACCGTGGCGGTGCTCAGGCATTCAAGCTCGATACGCTTTTGAAACTAGCGGATGTTAAAGGAACCGATGGCAAGACTACACTCTTACACTTTGTCGTACAGGAGATTATTCGTTCGGAGGGCATCCGAGCAGCCCGCTCCGACAGACAAAGCCGGAGTTCGTCCAGCGTAATCTCCAGCGATACGATTTTCGAGGACTTCACCGACGATTCGACGGAACATTATCGGCAATTAGGGCTTCAGGTGGTTTCTAGTTTAAGCACGGAGCTCCAGGACGTTAAAAGAGCGGCTGCCATAGATGCGGAGGGGCTAACGACGACGATATCGAAACTTGGCCAGTCTCTGTTTAAAACCAAAGCATTCATAGACGCGGAGATGAAGAGTTTAGACGAAGACAGCAAATTCCACCAATCGTTGTCGAAATTTTTGGAAGGAGCGGAAGCAGATATTTCGTGGATTGCAGTGGAAGAAAAGAAGATAATGGCATTGGTGAGGAGCACGGTGGATTACTTCCATGGACATTCTGGAAAGGAGGAAGGATTGAGATTGTTTACGATCGTACGGGACTTCTTGATTGTGTTGGACAAGACATGTAAACAGGTCAAAGAAGCAGCTGAGGCTGCGGCCAAGCAAGCGAAGAATTCCAAAAAAGAAACTGCGACATCGTCGGCTACTTACAAGCAGAATTCAGATCTACGGCAGCGGCTATTTCCGGCAATTGCAGAACGACGGATAGGCGATGATTCAAGTTCTTCGGACGAGGACGACGATGGCGAGAGTTCATCTTCATCATCCTAG 2799 47.37 MVIQREMELRRAGYVVVFVTLLCALAIASSEGRRKTVEMVLANSANCHFTSSKLDSDMGQKACMRELAEKEYEAEEFVPCIHKKNMGKDAIRILPTDMKHDLLDCLRKKTMLTRGSEPSSSLFDRFSKPIELFFSGGSDSRMRHLIRASQDSSEPHLAEAPAPSPSPSPSPSPSPEAESPASSPFPSPSLAPTPSPSYAPTKSPYRNLRPPVEAPAPSPEPLPDDTDVSDLPTPSVVRSPPPPRASPKSRPPKKHEEDQTAIIAGIVAAGVGVVLVVALLLFCCRRGEKSKVDPKDGQKDERPLLNISLSELSAGSSQMSYSLGNPATKEVNAGNGTKPPSFVGNLSVNPENDTSMAEGPTFDGKSSAMPPLKPPPGRTDSQPPPEPAPTPAPAPAAAPAAAPAPPPPPAPRAPPPPPLKVGRPPPAPPTAIPGKSQAAPMGPHRRGPSGSSMDGDSGAQKTKLKPFFWDKVLANPGQSMVWHEISAGSFQFNEEMMESLFGYTAVAANKGDRKKDLALDPSAQFIQIIDAKKAQNLSILLRALNVTTAEVLDALEEGNPDLPAELLQTLLKMAPTTEEELKLRLFSGDLSQLGPAERFLKVLVDVPFAFKRLECLLFMLSMSEDVTNIKESFATLEVACNNLRNSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRAARSDRQSRSSSSVISSDTIFEDFTDDSTEHYRQLGLQVVSSLSTELQDVKRAAAIDAEGLTTTISKLGQSLFKTKAFIDAEMKSLDEDSKFHQSLSKFLEGAEADISWIAVEEKKIMALVRSTVDYFHGHSGKEEGLRLFTIVRDFLIVLDKTCKQVKEAAEAAAKQAKNSKKETATSSATYKQNSDLRQRLFPAIAERRIGDDSSSSDEDDDGESSSSSS 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10220699 10224119 - CmPI595203_02g008490.1 Cmu02g0849 408898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0849 932 SMART it6_source 454 876 IPR015425 -
Cmu02g0849 932 MobiDBLite consensus disorder prediction 148 257 - -
Cmu02g0849 932 Gene3D Formin, FH2 domain 462 901 IPR042201 -
Cmu02g0849 932 MobiDBLite consensus disorder prediction 314 361 - -
Cmu02g0849 932 SUPERFAMILY Formin homology 2 domain (FH2 domain) 405 879 - -
Cmu02g0849 932 Pfam Formin Homology 2 Domain 459 860 IPR015425 -
Cmu02g0849 932 MobiDBLite consensus disorder prediction 918 932 - -
Cmu02g0849 932 MobiDBLite consensus disorder prediction 881 899 - -
Cmu02g0849 932 MobiDBLite consensus disorder prediction 369 433 - -
Cmu02g0849 932 Coils Coil 865 885 - -
Cmu02g0849 932 MobiDBLite consensus disorder prediction 314 461 - -
Cmu02g0849 932 PANTHER FORMIN-RELATED 216 921 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Cmu02g0849 932 ProSiteProfiles Formin homology-2 (FH2) domain profile. 454 887 IPR015425 -
Cmu02g0849 932 MobiDBLite consensus disorder prediction 876 932 - -
Cmu02g0849 932 MobiDBLite consensus disorder prediction 160 199 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0849 K28090 - - csv:101206094 1044.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0849 Cmu-Chr2:10220699 Cmu05g1539 Cmu-Chr5:24171172 2.20E-154 dispersed
Cmu02g0849 Cmu-Chr2:10220699 Cmu06g1648 Cmu-Chr6:27607055 3.50E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g937 Blo04g01082 Blo16g00351 . . . Bpe15g00301 . . . . Cma02g00531 . Car02g00366 . . . . . . . . . . . Cla01g01710 Cam01g1796 Cec04g1443 Cco04g1507 Clacu01g1821 Cmu01g1699 Cre04g1372 Cone6ag1454 Cone9ag1375 . . Lsi01g00902 . . Cme08g00643 . . Bda11g01477 . Bpe13g00127 . Bma03g01142 Bma06g00347 Sed14g0912 Cmo02g00543 . . . . . . Cpe05g01150 Bhi10g01479 Tan05g1655 Cmetu11g1138 . Hepe08g0488 . . Cla02g00812 Cam02g0859 Cec02g0866 Cco02g0897 Clacu02g0858 Cmu02g0849 Cre02g1167 . . . .
Vvi12g553 Blo02g00105 Blo15g00519 Bda06g00343 Bda13g00633 . . . . . . Cma02g00145 Cma20g00639 Car02g00124 Car20g00517 . . . . . . . . . . . . . . . . . . Cone10ag1297 . Cone12ag1403 . . . . . . . . Bpe14g00693 Bpe07g00592 Bma02g01338 Bma12g00784 Sed14g0912 Cmo02g00150 . . . . . Cpe16g00458 Cpe05g01457 Bhi10g01479 Tan05g1655 Cmetu11g1138 . Hepe08g0488 . . Cla02g00812 Cam02g0859 Cec02g0866 Cco02g0897 Clacu02g0858 Cmu02g0849 Cre02g1167 . . . Cme11g00755
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu07g0289 . 181 1055 FH2 protein (formin) Gene Family AT3G25500 51.7 3.7e-190 662.5
Cmu11g0091 . 465 941 FH2 protein (formin) Gene Family AT3G25500 66.9 2.2e-166 583.6
Cmu02g1216 . 446 902 FH2 protein (formin) Gene Family AT3G25500 60.1 8.3e-142 501.9
Cmu03g2293 . 496 893 FH2 protein (formin) Gene Family AT3G25500 51.7 3.1e-104 377.1
Cmu07g0289 . 618 1072 FH2 protein (formin) Gene Family AT2G43800 60.1 1.3e-140 497.7
Cmu02g1216 . 480 918 FH2 protein (formin) Gene Family AT2G43800 55.1 9.2e-126 448.4
Cmu02g0849 . 283 595 FH2 protein (formin) Gene Family AT4G15200 55.3 3.5e-52 203.0
Cmu05g1539 . 564 710 FH2 protein (formin) Gene Family AT4G15200 66.7 3.4e-47 186.4
Cmu05g1539 . 565 1001 FH2 protein (formin) Gene Family AT5G54650 69.2 4.4e-168 589.0
Cmu02g0849 . 449 912 FH2 protein (formin) Gene Family AT5G54650 63.1 4.1e-158 555.8
Cmu07g0289 . 629 1030 FH2 protein (formin) Gene Family AT5G54650 50.6 7.2e-102 369.0
Cmu02g1216 . 31 921 FH2 protein (formin) Gene Family AT5G67470 58.3 2.2e-236 815.8
Cmu07g0289 . 610 1072 FH2 protein (formin) Gene Family AT5G67470 58.9 9.9e-136 481.5
Cmu11g0091 . 478 923 FH2 protein (formin) Gene Family AT5G67470 60.6 1.1e-131 468.0
Cmu03g2293 . 496 895 FH2 protein (formin) Gene Family AT5G67470 50.9 9.0e-105 378.6
Cmu05g2548 . 349 832 FH2 protein (formin) Gene Family AT1G59910 52.1 7.4e-126 448.7
Cmu07g0289 . 650 1031 FH2 protein (formin) Gene Family AT5G48360 52.3 1.0e-99 361.7
Cmu02g1216 . 504 879 FH2 protein (formin) Gene Family AT5G48360 50.5 1.6e-89 327.8
Cmu02g1216 . 484 878 FH2 protein (formin) Gene Family AT3G05470 52.0 3.6e-106 383.3
Cmu05g1539 . 570 984 FH2 protein (formin) Gene Family AT3G05470 50.4 6.2e-106 382.5
Cmu07g0281 . 982 1293 FH2 protein (formin) Gene Family AT1G42980 50.8 5.9e-69 258.1
Cmu07g0281 . 1 1300 FH2 protein (formin) Gene Family AT1G31810 66.0 0.0e+00 1225.7
Cmu06g1291 . 1 1245 FH2 protein (formin) Gene Family AT1G31810 51.0 1.4e-241 833.6
Cmu06g1648 . 1383 1704 FH2 protein (formin) Gene Family AT5G07650 74.8 1.6e-129 460.7
Cmu04g1244 . 980 1284 FH2 protein (formin) Gene Family AT5G07650 71.1 2.2e-118 423.7
Cmu05g1671 . 1107 1429 FH2 protein (formin) Gene Family AT5G07650 65.0 3.7e-110 396.4
Cmu06g1291 . 935 1254 FH2 protein (formin) Gene Family AT5G07650 62.9 1.1e-109 394.8
Cmu07g0281 . 966 1297 FH2 protein (formin) Gene Family AT5G07650 59.6 3.5e-108 389.8
Cmu06g1648 . 1310 1697 FH2 protein (formin) Gene Family AT5G07770 69.2 1.5e-140 496.9
Cmu04g1244 . 903 1282 FH2 protein (formin) Gene Family AT5G07770 63.8 9.4e-127 451.1
Cmu05g1671 . 1031 1421 FH2 protein (formin) Gene Family AT5G07770 59.4 1.2e-118 424.1
Cmu06g1291 . 858 1246 FH2 protein (formin) Gene Family AT5G07770 57.3 4.4e-116 415.6
Cmu07g0281 . 902 1291 FH2 protein (formin) Gene Family AT5G07770 55.2 2.8e-115 412.9
Cmu05g1671 . 1023 1429 FH2 protein (formin) Gene Family AT3G32400 76.2 1.3e-169 593.2
Cmu06g1291 . 865 1255 FH2 protein (formin) Gene Family AT3G32400 69.2 2.8e-148 522.3
Cmu06g1648 . 1310 1704 FH2 protein (formin) Gene Family AT3G32400 65.2 8.7e-142 500.7
Cmu07g0281 . 902 1296 FH2 protein (formin) Gene Family AT3G32400 65.5 9.6e-141 497.3
Cmu04g1244 . 873 1282 FH2 protein (formin) Gene Family AT3G32400 58.6 7.6e-130 461.1
Cmu05g1671 . 21 1429 FH2 protein (formin) Gene Family AT2G25050 51.1 0.0e+00 1156.7
Cmu06g1291 . 1 1255 FH2 protein (formin) Gene Family AT2G25050 53.6 2.0e-290 995.7
Cmu06g1648 . 1311 1704 FH2 protein (formin) Gene Family AT5G07780 63.0 1.7e-123 439.9
Cmu04g1244 . 904 1284 FH2 protein (formin) Gene Family AT5G07780 58.2 2.0e-111 399.8
Cmu05g1671 . 1032 1422 FH2 protein (formin) Gene Family AT5G07780 54.3 3.3e-103 372.5
Cmu07g0281 . 903 1292 FH2 protein (formin) Gene Family AT5G07780 52.0 8.2e-102 367.9
Cmu06g1291 . 865 1254 FH2 protein (formin) Gene Family AT5G07780 53.8 1.8e-101 366.7
Cmu06g1648 . 1 1713 FH2 protein (formin) Gene Family AT5G07740 60.6 0.0e+00 1133.2
Cmu06g1648 . 1382 1711 FH2 protein (formin) Gene Family AT5G07760 74.4 3.3e-128 456.4
Cmu04g1244 . 979 1282 FH2 protein (formin) Gene Family AT5G07760 70.5 3.2e-115 413.3
Cmu06g1291 . 934 1254 FH2 protein (formin) Gene Family AT5G07760 64.7 5.3e-110 396.0
Cmu05g1671 . 1106 1438 FH2 protein (formin) Gene Family AT5G07760 64.0 2.0e-109 394.0
Cmu07g0281 . 976 1297 FH2 protein (formin) Gene Family AT5G07760 60.1 3.9e-105 379.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001056 4 3 4 4 4 2 4 2 2 2 2 2 4 2 2 3 2 4 4 2 2 2 2 2 3 2 2 3 3 2 81