Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0866 ATGAGAAAGATGGAGGGTCCGGTGTGTGTTTTGCCATTGTTAAACGGCAGAAGAAAAACGAAGAGAGTTCATCAAATACTCCAAAAGGACTCATTCGTTAGCGATGCCAAAGGTGAGGCTTCTAGAGAAATTGATCTTGAGAAGGGAACTCGAGTTCCGCGAAGCAATTCTGACATGGGAATGGAGGCCTTCAATAAGCAGATACAAGACGTTGAGGTTCAAGTAGAGAAGCTCTCTGGGCTTCTTATTAAACTGAAGGATGCTAATGAGGAATCGAAGGCTGTTACCAAAGCATTAGAGATGAAAGCTATCAAGAAGCGTATGGAAAAGGATATCGATGAAGTAGGGAAAATAGCACGCAATGTCAAGGGGAAGCTGGAGGCTGTAAATAAAGATAACTTGACCAATAGGCAGAAGCCCGGGTGTGAGAAGGGAACGGCTATTGACAGAGCAAGAATGAATGTGACAAATGCCTTGACAAAAAAGTTCAAGGATCTGATGATAGAATTTCAGACCCTTCGGCAAAGAATTCAAGATGAGTACCGTGAAGTTGTGGAAAGACGAGTGATTACAGTTACGGGAAGCAGACCAGATGAGACGACAATTGATCACCTTATAGAAACTGGAAACAGTGAGCAAATATTCCAGAATGCATTTGTACAAATGGGACGAGGACAGGTTATCAGTGCGGTGGAGGAAATTCAAGAGCGACACGATGCAGTTAAAGAGATTGAGAAAAGGCTCTCGGAATTGCATCAGATTTACCTTGACATGGCAGTTTTAGTGGAAGCCCAGAGTGAAATTTTGGATAACATAGAAAATCAGGTAACGAATGCAGTGGACCACGTTCGAACAGGAACCGATGCACTCCAGATAGCGAAGAGCTTACAGAAGCGATCAAGAAAATGCATGATGATTGGCATCATATTGCTGCTGGTCATAGCAATCATAATCGTCCTCGCAGTGCATCCATGGAAGAAGTAA 984 43.19 MRKMEGPVCVLPLLNGRRKTKRVHQILQKDSFVSDAKGEASREIDLEKGTRVPRSNSDMGMEAFNKQIQDVEVQVEKLSGLLIKLKDANEESKAVTKALEMKAIKKRMEKDIDEVGKIARNVKGKLEAVNKDNLTNRQKPGCEKGTAIDRARMNVTNALTKKFKDLMIEFQTLRQRIQDEYREVVERRVITVTGSRPDETTIDHLIETGNSEQIFQNAFVQMGRGQVISAVEEIQERHDAVKEIEKRLSELHQIYLDMAVLVEAQSEILDNIENQVTNAVDHVRTGTDALQIAKSLQKRSRKCMMIGIILLLVIAIIIVLAVHPWKK 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10572260 10575805 - CmPI595203_02g008660.1 Cmu02g0866 408915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0866 327 Gene3D - 222 323 - -
Cmu02g0866 327 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 231 293 IPR000727 -
Cmu02g0866 327 FunFam Syntaxin 132 224 324 - -
Cmu02g0866 327 Gene3D - 56 185 - -
Cmu02g0866 327 Coils Coil 61 88 - -
Cmu02g0866 327 SMART tSNARE_6 226 293 IPR000727 -
Cmu02g0866 327 SMART SynN_4 56 182 IPR006011 GO:0016020(InterPro)
Cmu02g0866 327 CDD SynN 61 218 IPR006011 GO:0016020(InterPro)
Cmu02g0866 327 Pfam Syntaxin 64 265 IPR006011 GO:0016020(InterPro)
Cmu02g0866 327 CDD SNARE_syntaxin1-like 230 291 - -
Cmu02g0866 327 PANTHER SYNTAXIN 63 312 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cmu02g0866 327 SUPERFAMILY t-snare proteins 58 286 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cmu02g0866 327 Pfam SNARE domain 267 319 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0866 Cmu-Chr2:10572260 Cmu10g2115 Cmu-Chr10:27095346 2.40E-84 dispersed
Cmu02g0864 Cmu-Chr2:10530186 Cmu02g0866 Cmu-Chr2:10572260 2.70E-79 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0866 K08486 - csv:101214355 502.286