Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0869 ATGCCTGCCGGAATTATGACACCGGCCAGAAGCATGGCGTCGATGATTGGAAGAAATGAGAATAATGCTGCTGGATTTGCCTCTCCTTCTGGATTTCCTCTTTCTCAGTCAAGCATGATGGACAGTCATCTCCTCCCCTTAGACATCCCTCAAAACACTTCCGAAAGCGACCTTGCTCGAATCCGAGACGATGACTTCGACAGTGCCACTAAATCCGGCAGCGACAACAACCCTGACCTTGTCTCCGGTGACGACCAAGATCCTCGTCCTAAAAAGAAGCGCTATCATCGTCATACTCAACATCAGATCCAAGAAATGGAAGCGTTCTTCAAGGAGTGTCCTCACCCTGATGACAAACAAAGAAAGGAATTAAGCAGGGAATTAGGGTTAGAGCCGTTGCAAGTCAAATTTTGGTTCCAAAACAAACGCACTCAAATGAAGAATCAACACGAGCGGCATGAGAACACTCAACTCAGAACAGAAAATGAGAAGCTTAGGGCTGATAACATGAGATACAGAGAAGCTCTTAGCAATGCCTCGTGCCCTAATTGTGGTGGCCCTACTGCCATTGGTGAAATGTCTTTTGATGAACATCATCTTAGACTCGAAAATGCCCGTCTTCGAGAAGAGATCGATCGCATTTCAGCAATAGCTGCAAAATACGTAGGGAAGCCAGTCGTGAACTACCCTCTACTTTCTCCACCAGTTCCAGCTCGCCCACTAGAGCTAGGAATGGGCAACTTCGGACCACAACCAGGCCTCGGAGGAGGAGACCTCTACAGCTCGGCCAGCGACCTGATCCGATCCATCAGCGCCCCAACCGAGGCTGATAAGCCAATGATCATCGAGCTAGCAGTTGCAGCCATGGAAGAGCTGACTAGAATGGCTCAAATGGGGGAGCCATTGTGGATGACTAGCCTTGATGGCTCCACCCATGTGCTCAATGAAGATGAGTACTTGAGAACGTTTCCTAGAGGCATTGGTCCTAAGCCTTCTGGGTTTAAATGTGAAGCCTCTCGTGAATCTGCTGTTGTCATCATGAACCACATTAACCTAGTTGAGATTCTCATGGATGTGAACCAATGGTCGACTTTATTTTCTGGAATTGTGTCTAGAGCTATGACACTTGAAGTATTATCAACCGGAGTTGCTGGAAATTACAATGGAGCTTTGCAAGTGATGACGTCGGAATTTCAAGTTCCATCGCCATTGGTTCCGACCCGGGAAAGCTACTTCGTTAGATATTGTAAGCAACATGGGGATGGGACATGGGCGGTGGTGGATGTTTCGTTGGATGATTTGCGCCCTACCCCCGGAGTTCGATGTAGACGAAGACCTTCCGGTTGTTTGATCCAAGAAATGCCAAATGGTTATTCGAAGGTTACATGGGTTGAGCATGTAGAGGTGGATGATAGAGGAGTTCATAATCTTTACAAGCAACTAGTGAGCTCTGGCCAAGCTTTTGGGGCCAAACGTTGGGTTACAACTTTAGATCGCCAATGTGAACGACTTGCTAGTGCCTTGGCTACTAATATTCCAACTGGGGATGTTGGAGTGATAACGAATCAAGAAGGAAGAAAGAGCATGTTGAAGCTGGCTGAGAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGCGCCTCCACAACTCACACATGGACCACTTTGTCGGGTACGGGTGCAGACGATGTTCGAGTCATGACTCGAAAGAGCATCGACGACCCGGGAAGACCTCCTGGTATTGTCCTCAGTGCTGCAACTTCCTTCTGGCTCCATGTTCCACCCAAGAGAATCTTCGATTTCCTTCGAGATGAAAACTCTCGCAGCGAGTGGGACATTCTTTCCAACGGTGGAGTAGTTCAAGAAATGGCCCACATTGCCAATGGCCGTGACACTGGCAACTGCGTTTCTCTCTTACGAGTAAATAGCGCAAATTCAAGCCAAAGCAACATGCTAATCCTGCAAGAAAGCTGCACGGACCCAACAGCCTCATTTGTGATCTACGCTCCAGTTGACATAGTAGCAATGAACGTCGTCCTGAACGGCGGTGATCCCGACTACGTAGCACTTCTCCCCTCAGGCTTTGCCATTCTCCCCGACGGCGCTGGCGGAGAGGGCGTTTCCGGTGGGTCGTTGCTGACGGTTGCATTTCAAATCCTGGTGGATTCAGTGCCCACGGCAAAACTGTCACTTGGGTCAATTGCAACGGTAAACAATCTGATAGCTTGTACGGTGGAGAGGATAAAAGCGTCATTATCATGTGAGAATGCATAA 2271 48.48 MPAGIMTPARSMASMIGRNENNAAGFASPSGFPLSQSSMMDSHLLPLDIPQNTSESDLARIRDDDFDSATKSGSDNNPDLVSGDDQDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSPPVPARPLELGMGNFGPQPGLGGGDLYSSASDLIRSISAPTEADKPMIIELAVAAMEELTRMAQMGEPLWMTSLDGSTHVLNEDEYLRTFPRGIGPKPSGFKCEASRESAVVIMNHINLVEILMDVNQWSTLFSGIVSRAMTLEVLSTGVAGNYNGALQVMTSEFQVPSPLVPTRESYFVRYCKQHGDGTWAVVDVSLDDLRPTPGVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGQAFGAKRWVTTLDRQCERLASALATNIPTGDVGVITNQEGRKSMLKLAERMVISFCAGVSASTTHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLHVPPKRIFDFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDPTASFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGAGGEGVSGGSLLTVAFQILVDSVPTAKLSLGSIATVNNLIACTVERIKASLSCENA 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10740482 10745374 + CmPI595203_02g008690.1 Cmu02g0869 408918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0869 756 FunFam Homeobox-leucine zipper protein HDG1 79 165 - -
Cmu02g0869 756 SUPERFAMILY Bet v1-like 522 748 - -
Cmu02g0869 756 FunFam Homeobox-leucine zipper protein GLABRA 2 283 502 - -
Cmu02g0869 756 MobiDBLite consensus disorder prediction 65 100 - -
Cmu02g0869 756 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 72 754 IPR042160 -
Cmu02g0869 756 Pfam Homeodomain 92 148 IPR001356 GO:0003677(InterPro)
Cmu02g0869 756 CDD homeodomain 92 150 IPR001356 GO:0003677(InterPro)
Cmu02g0869 756 SUPERFAMILY Homeodomain-like 78 149 IPR009057 -
Cmu02g0869 756 CDD START_ArGLABRA2_like 278 502 - -
Cmu02g0869 756 SMART START_1 283 503 IPR002913 GO:0008289(InterPro)
Cmu02g0869 756 ProSiteProfiles 'Homeobox' domain profile. 89 149 IPR001356 GO:0003677(InterPro)
Cmu02g0869 756 SMART HOX_1 90 153 IPR001356 GO:0003677(InterPro)
Cmu02g0869 756 Coils Coil 143 175 - -
Cmu02g0869 756 Gene3D - 333 501 IPR023393 -
Cmu02g0869 756 ProSitePatterns 'Homeobox' domain signature. 124 147 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu02g0869 756 ProSiteProfiles START domain profile. 274 506 IPR002913 GO:0008289(InterPro)
Cmu02g0869 756 Gene3D - 81 166 - -
Cmu02g0869 756 Pfam START domain 284 503 IPR002913 GO:0008289(InterPro)
Cmu02g0869 756 SUPERFAMILY Bet v1-like 274 505 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0869 Cmu-Chr2:10740482 Cmu03g1092 Cmu-Chr3:5380430 1.80E-255 dispersed
Cmu07g0191 Cmu-Chr7:1838309 Cmu02g0869 Cmu-Chr2:10740482 2.20E-16 transposed
Cmu01g2156 Cmu-Chr1:34187174 Cmu02g0869 Cmu-Chr2:10740482 9.90E-264 wgd
Cmu02g0186 Cmu-Chr2:1759032 Cmu02g0869 Cmu-Chr2:10740482 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5726 PF01852 START 7.40E-60 CL0209 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0869 K09338 - csv:101214763 1439.86