Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0873 ATGAAGGTGTTTTGGATTAGGAGGAATGGGCATTGGGTCAAAAGCAGAGTGATGTTATTTGCATTATTATTGTTGTTTGGGATGTGGATGCCTTTGGGAGTGATTGGTGTTTCTTCTTCGAATCAAAGGGTGTTGAACATTGGAGTTTTGTTCACTCTTGATTCGGTTATTGGAAGGTCTGCACAGCCTGCAATTTTAGCTGCCCTGGACGACGTCAATGCCGATAACAACATTCTTCCAGGAACAAAGCTGAATTTGATCCTACATGACACCAACTGCAGTGGATTTCTTGGAACTCTGGAAGCCTTGCAGTTGATGGAAGATGAAGTGGTTGTTGTTATTGGGCCGCAATCTTCGGGCATCGCTCATGTCATTTCCCATGTTGTTAATGAACTTCATATACCGCTTCTATCATTTGGAGCTACAGATCCTGCTTTGTCTACACAGCAATACCAGTATTTCGTTCGGACCACACAAAGTGATTACTTCCAAATGAATGCAATTGCTGATATGGTACATTATTTTGGATGGAGAGAGGTCGTTACCATTTTTGTAGACGATGATAATGGCAGGAATGGGATCTCAGCACTGAACGATGCCTTGGCGAAGAAGCAAGCAAAGATCTCTTATAAGGCTGCCTTCCCTCCTGGATCCTCCAATAGCGCAATAAGTGACTTGTTGGTTTCGATAAACCTAATGGAATCTCGGGTTTACATTGTACACGTCAATCCTGACACAGGTCTTTCAATATTTTCAATAGCTAAGAAACTTCAGATGATGGGTAATGGCTATGTCTGGATTGCAACAGATTGGCTTTCTTCTTTTCTTGATTCTTTTGAAACAAATATTCTTGAGGTAATGAATCAATTACAGGGTGTTGTTGCTCTTCGTCACCATACCCCAGATGGTGATTTGAAGAAAAACTTTGTCTCCAAGTGGAGGAATCTAAAATTCAAGAAGGGTCCAAACTTCAACTCGTATGCACTCTATGCATACGACTCTGTTTGGTTAGCAGCCCATGCTCTCGACACATTTATTAAAGAAGGCGGAAATATATCCTTTTCCAACGACCTGAAGTTACGTGGAAACGATGAAAGCATGTTACACTTAAAATCTCTTTGGGTGTTTAACGACGGCAAACAACTTCTACAAACAATTAAGAGAACAAACTTCACTGGTGTAAGTGGGAAAATTCAATTTGGGGATGATAGAAATTTGATTCATCCATCTTATGATATCCTGAACATTGTGGGAACTGGTTCACGTAGAATTGGTTACTGGTCAAATTATTCTGGTCTATCAACTATTGCACCAGAAAACTTGTATACCAAGACTCTTAATGCTTCCCCTAATAACCATCTCTACAGTGTCATATGGCCGGGGGAAGTAACGGCCATTCCTCGAGGATGGGTGTTTCCACACGATGGGAAACCATTACAAATTGTAGTACCTAACCGAGTGAGTTACAAAGCCTTTGTTTCTAAAGACAAGAACCCTCCAGGTGTTAAAGGATATTGTATAGACGTGTTTGAAGCTGCCATAAACTTGTTGCCTTATCCAGTTCCTCACATATATATATTATATGGAGATGGAAAGGACACTCCTGAGTACAACAATCTTGTAGCTGAAGTTTCACAGAATAAATACGATGCAGTTGTTGGAGACATTACAATTGTAACAAATAGAACAAAGATTGTAGACTTCACACAACCATTTATGGAGTCCGGACTTGTTGTAGTTACTGTCGTCAAAGAGGAGAAGTCTAGTCCATGGGCTTTTCTCAGGCCATTTACTATTCAAATGTGGGTTATCACTGCAATATTCTTTATTTTTGTTGGAGCAGTTGTTTGGATTCTCGAGCACCGGACTAATGAAGAGTTTCGCGGTCCGCCGAGGCAACAATTAATTACAATATTTTGGTTTAGTTTCTCGACAATGTTTTTTTCTCATAAGGAAAACACTGTAAGCACCCTTGGACGGTTGGTGCTGATAATATGGCTCTTTGTTGTGTTAATTATCAACTCAAGCTACACAGCTAGTTTGACGTCGATCTTAACGGTACAACAACTAACGTCAAAGATTGAAGGGATTGATAGCTTAATCTCTAGCACAGATGCAATTGGAGTTCAAGAAGGGTCATTTGCATTGAATTATCTGATTGATGAATTGAATATAGCAGCATCTAGGATCATTAAACTGAAAAGTCAAGAGGAATATGTCGATGCTCTTAAGCGTGGATCAAGAAATGGTGGGGTCGCTGCCATTGTTGACGAGCTTCCTTATGTTGAGCTTTTTTTGGCTGGTACCAATTGCATATTCAGGACAGTTGGACAAGAGTTCACGAAAAGCGGATGGGGATTTGCATTCCAAAGGGACTCTCCTCTTGCAGTTGATTTGTCAACAACCATTCTTCAACTCTCAGAGAATGGTGATCTTCAAAAGATCCACGACAAATGGCTATCGCGAACTGAGTGTTCGATGAGCCTAAACCAAGTTGACGTAAACAAGCTATCATTGAGTAGCTTTTGGGGATTGTTCCTAATTTGTGGCATTTCCTGCTTTGTTGCTCTTTCAATATTCTTCTTTCGAGTATTATTCCAATACCGAAGATTTACCCCGGAAATCCAGTTTGAAGTCGAGGAAATTGAACCTGTTAGGACGAGACGCCTTAGTCGTACAACCAGCTTCATGCACTTTGTAGATAAAAAAGAAGCAGAAGTTAAAGGCCAGCTTAAAAGAAAAGCTAGTGATAACAAACAAGCTAGCCAGAGCTCAGAGGGCCACCCTAATTCATCTCCTTGA 2802 40.58 MKVFWIRRNGHWVKSRVMLFALLLLFGMWMPLGVIGVSSSNQRVLNIGVLFTLDSVIGRSAQPAILAALDDVNADNNILPGTKLNLILHDTNCSGFLGTLEALQLMEDEVVVVIGPQSSGIAHVISHVVNELHIPLLSFGATDPALSTQQYQYFVRTTQSDYFQMNAIADMVHYFGWREVVTIFVDDDNGRNGISALNDALAKKQAKISYKAAFPPGSSNSAISDLLVSINLMESRVYIVHVNPDTGLSIFSIAKKLQMMGNGYVWIATDWLSSFLDSFETNILEVMNQLQGVVALRHHTPDGDLKKNFVSKWRNLKFKKGPNFNSYALYAYDSVWLAAHALDTFIKEGGNISFSNDLKLRGNDESMLHLKSLWVFNDGKQLLQTIKRTNFTGVSGKIQFGDDRNLIHPSYDILNIVGTGSRRIGYWSNYSGLSTIAPENLYTKTLNASPNNHLYSVIWPGEVTAIPRGWVFPHDGKPLQIVVPNRVSYKAFVSKDKNPPGVKGYCIDVFEAAINLLPYPVPHIYILYGDGKDTPEYNNLVAEVSQNKYDAVVGDITIVTNRTKIVDFTQPFMESGLVVVTVVKEEKSSPWAFLRPFTIQMWVITAIFFIFVGAVVWILEHRTNEEFRGPPRQQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLTSKIEGIDSLISSTDAIGVQEGSFALNYLIDELNIAASRIIKLKSQEEYVDALKRGSRNGGVAAIVDELPYVELFLAGTNCIFRTVGQEFTKSGWGFAFQRDSPLAVDLSTTILQLSENGDLQKIHDKWLSRTECSMSLNQVDVNKLSLSSFWGLFLICGISCFVALSIFFFRVLFQYRRFTPEIQFEVEEIEPVRTRRLSRTTSFMHFVDKKEAEVKGQLKRKASDNKQASQSSEGHPNSSP 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10849604 10854474 - CmPI595203_02g008730.1 Cmu02g0873 408922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0873 933 FunFam Glutamate receptor 590 720 - -
Cmu02g0873 933 Pfam Ligand-gated ion channel 822 853 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cmu02g0873 933 SMART GluR_14 480 822 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cmu02g0873 933 FunFam Glutamate receptor 716 824 - -
Cmu02g0873 933 FunFam Glutamate receptor 474 590 - -
Cmu02g0873 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 118 146 - -
Cmu02g0873 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 58 74 - -
Cmu02g0873 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 249 272 - -
Cmu02g0873 933 PIRSF IGluLR_plant 14 932 IPR017103 -
Cmu02g0873 933 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 46 910 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cmu02g0873 933 CDD PBP1_GABAb_receptor_plant 46 434 IPR044440 -
Cmu02g0873 933 CDD GluR_Plant 477 820 - -
Cmu02g0873 933 Gene3D - 64 408 - -
Cmu02g0873 933 Pfam Receptor family ligand binding region 61 418 IPR001828 -
Cmu02g0873 933 Gene3D - 589 717 - -
Cmu02g0873 933 Gene3D - 160 433 - -
Cmu02g0873 933 Pfam Bacterial extracellular solute-binding proteins, family 3 536 598 IPR001638 -
Cmu02g0873 933 Gene3D - 474 588 - -
Cmu02g0873 933 MobiDBLite consensus disorder prediction 916 933 - -
Cmu02g0873 933 FunFam Glutamate receptor 160 318 - -
Cmu02g0873 933 SUPERFAMILY Periplasmic binding protein-like I 40 471 IPR028082 -
Cmu02g0873 933 Gene3D - 718 824 - -
Cmu02g0873 933 SUPERFAMILY Periplasmic binding protein-like II 455 821 - -
Cmu02g0873 933 MobiDBLite consensus disorder prediction 907 933 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0338 Cmu-Chr2:3098302 Cmu02g0873 Cmu-Chr2:10849604 7.40E-252 dispersed
Cmu02g0873 Cmu-Chr2:10849604 Cmu11g1873 Cmu-Chr11:30832073 2.00E-285 dispersed
Cmu02g0873 Cmu-Chr2:10849604 Cmu02g0874 Cmu-Chr2:10908883 0.00E+00 tandem
Cmu02g0189 Cmu-Chr2:1787955 Cmu02g0873 Cmu-Chr2:10849604 5.10E-244 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0873 K05387 - csv:101215485 1649.03