Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0874 ATGAAGGTGTTTTGGATTAGGAGGAATGGGCATTGGGTCAAAAGCAGAGTGATGTTATTTGCATTATTATTGTTGTTTGGGATGTGGATGCCTTTGGGAGTGATTGGTGTTTCTTCTTCGAATCAAAGGGTGTTGAACATTGGAGTTTTGTTCACTCTTGATTCGGTTATTGGAAGGTCTGCACAGCCTGCAATTTTAGCTGCCCTGGACGACGTCAATGCCGATAACAACATTCTTCCAGGAACAAAGCTGAATTTGATCCTACATGACACCAACTGCAGTGGATTTCTTGGAACTCTGGAAGCCTTGCAGTTGATGGAAGATGAAGTGGTTGTTGTTATTGGGCCGCAATCTTCGGGCATCGTTCACGTTATTTCTCATGTTGTTAATGAACTTCATATACCGCTTCTATCATTTGGAGCTACAGATCCTGCTTTGTCTGCACAACAATACCAGTATTTCGTTCGGACCACACAAAGTGATTACTTTCAAATGAATGCAATTGCTGATATGGTAGATTATTTTAAATGGAGAGAGGTCGTTGCCATTTTTGTAGATGATGATAATGGCAGGAGTGGGATATCAGCATTGAATGATGCCTTAGTGAAGAAGCGAGCCAAGATCTCTTATAAGGCTGCCTTCCCTCCTGGATCCTCCAATAGCGAAATAAGTGACTTGTTGGCTTCGATAAACTTGATGGAATCTCGGGTTTACATTGTACACGTCAATCCCGACACAGGTTTAGCAATATTTTCAATAGCTAAGAAACTTCAAATGATGGGTAGTGGCTATGTCTGGATCGCAACAGATTGGCTTCCTTCTTTTCTTGATTCTTTTGAAACAAATAGTCCTGATGTAATGAATCAGTTACAAGGTGTTGTTGCTCTTCGTCACCACACCCCTGATGACAATCGAAAGAAAAACTTTGTCTCCAAGTGGAGGAATCTAAAATACAAGAAGAGTCCAAACTTCAACTCTTATGCACTCTATGCATACGACTCTGTTTGGTTAGCAGCCCGTGCTCTTGACACCTTTATTAAAGAAGGTGGAAATATATCCTTTTCCAATGACCTGAATTTACGTGAAAACAATGGAAGCATGTTGCAGTTAAAATCCCTCCGAGTGTTTAACGACGGTGAACAACTTCTACAAACAATTAAGAGAACAAACTTCACTGGTGTAAGCGGGCAAATTCAATTTGGGGATGATAGAAATTTGATTCATCCAGCTTATGATATCCTAAACATTGGGGGAACTGGTTCACGTAGAATTGGCTACTGGTCAAATTATTCTGGTCTATCAACTATTGCACCAGAGAACTTGTATACCAAGCATCTCAATGCTTCCTCAAATAACCATCTCTATAGTGTTATATGGCCAGGTGAAATAACGACCGTTCCTCGAGGATGGGTGTTTCCACACAATGGGAAACCATTACAAATTGTAGTACCTAACCGAGTGAGTTACAAAGCCTTTGTGTTTAAAGACAAGAACCCTCCAGGAGTTAAAGGATATTGTATAGATGTATTTGAAGCTGCCATAAACTTGTTGCCTTATCCAGTTCCTCACATATATATATTATATGGAGATGGAAAGGACACTCCTGAGTACAACAGTCTTGTATATGAGGTTTCACAGAATAAATACGATGCAGCTGTTGGAGATATTACTATTGTAACGAATAGGACAAAGATTGTAGACTTCACACAACCATTTATGGAGTCGGGACTTGTTGTAGTTACTGTCGTCAAACAGGAGAAGTCTAGTCCATGGGCTTTTCTCAGGCCGTTTACTGTTCAAATGTGGGCTGTCACTGCAATATTTTTTATTTTTGTTGGAGCAGTTGTCTGGATTCTCGAGCATCGGACTAATGAAGAGTTTCGTGGTCCGCCAAGGAAACAATTAATTACAATATTTTGGTTTAGTTTCTCAACAATGTTCTTTTCTCATAAGGAAAATACTGTAAGCACCCTTGGACGGTTGGTGCTGATAATATGGCTCTTTGTTGTGTTAATTATCAACTCAAGCTACACAGCTAGTTTGACGTCGATCTTAACAGTGCAACAACTAACGTCAAAGATTGAAGGGATTGATAGCTTAATCTCTAGCACAGATGCCATTGGAGTTCAAGAAGGGTCATTTGCATTGAATTATTTGATTGATGAGCTGAATATAGCAGCATCTAGGATCATTAAATTGAAAAATCAAGAGGAATATGCTGATGCTCTTAAGCGTGGATCGGGAAATGGTGGGGTCGCTGCCATTGTTGACGAGCTTCCTTATGTTGAGCTTTTTTTGGCTGGTACTGATTGCCTATACAGGACAGTTGGACAGGAGTTCACGAAAAGTGGATGGGGATTTGCATTCCAAAGGGACTCTCCTCTTGCAGTTGATTTGTCAACAGCCATTCTTCAACTTTCAGAGAATGGTGATCTTCAAAAGATCCACGACAAATGGCTCTCGCGAACTGAGTGTTCGATGAGCTTGAACCAAGTCGACGTAAGCCAACTATCACTAAGTAGCTTTTGGGGATTGTTCCTAATTTGTGGCATTGCATGTTTTGTTGCTCTTTCGGTATTCTTCTTTCGAGTATTATTCCAATATCGAAGATTTACCCCAGAAAACCAGCCTGAAGTTGAAGAGATTGAACCTGTTAGGACGAGACGCCTTAGTCGTACAACTAGCTTCATGCACTTTGTAGATAAAAAAGAAGCAGAAGTCAAAGTACACCATTCGCTGCCACTTTTTACCCGTGCTCACACCGTTGCCGTCGACCTCAACGGCTCAAGCCCCCTCTCTCGTCTCTTCCATCTGAAGGCCGCCCCACCTCGTGTTCACCGGTGCCGCTGCAGCTTTCTTAATCGAACCGAGGTCGAATTTCAAATCTCACTTTCGGCAACTCCACCTCCGTCTTCCCCACCATCGACAACGACTCCACCTGCAACCCACCACGAACAACTCTACCACCTGCACCATTGA 2979 41.79 MKVFWIRRNGHWVKSRVMLFALLLLFGMWMPLGVIGVSSSNQRVLNIGVLFTLDSVIGRSAQPAILAALDDVNADNNILPGTKLNLILHDTNCSGFLGTLEALQLMEDEVVVVIGPQSSGIVHVISHVVNELHIPLLSFGATDPALSAQQYQYFVRTTQSDYFQMNAIADMVDYFKWREVVAIFVDDDNGRSGISALNDALVKKRAKISYKAAFPPGSSNSEISDLLASINLMESRVYIVHVNPDTGLAIFSIAKKLQMMGSGYVWIATDWLPSFLDSFETNSPDVMNQLQGVVALRHHTPDDNRKKNFVSKWRNLKYKKSPNFNSYALYAYDSVWLAARALDTFIKEGGNISFSNDLNLRENNGSMLQLKSLRVFNDGEQLLQTIKRTNFTGVSGQIQFGDDRNLIHPAYDILNIGGTGSRRIGYWSNYSGLSTIAPENLYTKHLNASSNNHLYSVIWPGEITTVPRGWVFPHNGKPLQIVVPNRVSYKAFVFKDKNPPGVKGYCIDVFEAAINLLPYPVPHIYILYGDGKDTPEYNSLVYEVSQNKYDAAVGDITIVTNRTKIVDFTQPFMESGLVVVTVVKQEKSSPWAFLRPFTVQMWAVTAIFFIFVGAVVWILEHRTNEEFRGPPRKQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLTSKIEGIDSLISSTDAIGVQEGSFALNYLIDELNIAASRIIKLKNQEEYADALKRGSGNGGVAAIVDELPYVELFLAGTDCLYRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSRTECSMSLNQVDVSQLSLSSFWGLFLICGIACFVALSVFFFRVLFQYRRFTPENQPEVEEIEPVRTRRLSRTTSFMHFVDKKEAEVKVHHSLPLFTRAHTVAVDLNGSSPLSRLFHLKAAPPRVHRCRCSFLNRTEVEFQISLSATPPPSSPPSTTTPPATHHEQLYHLHH 992
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10908883 10916689 - CmPI595203_02g008740.1 Cmu02g0874 408923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0874 992 FunFam Glutamate receptor 474 590 - -
Cmu02g0874 992 SUPERFAMILY Periplasmic binding protein-like I 40 471 IPR028082 -
Cmu02g0874 992 FunFam Glutamate receptor 590 720 - -
Cmu02g0874 992 Gene3D - 774 827 - -
Cmu02g0874 992 PIRSF IGluLR_plant 14 923 IPR017103 -
Cmu02g0874 992 Gene3D - 160 433 - -
Cmu02g0874 992 FunFam Glutamate receptor 716 824 - -
Cmu02g0874 992 SMART GluR_14 480 822 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cmu02g0874 992 MobiDBLite consensus disorder prediction 964 992 - -
Cmu02g0874 992 Pfam Ligand-gated ion channel 599 853 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cmu02g0874 992 CDD PBP1_GABAb_receptor_plant 46 434 IPR044440 -
Cmu02g0874 992 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 46 888 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cmu02g0874 992 Pfam Receptor family ligand binding region 61 418 IPR001828 -
Cmu02g0874 992 CDD GluR_Plant 477 820 - -
Cmu02g0874 992 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 331 343 - -
Cmu02g0874 992 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 58 74 - -
Cmu02g0874 992 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 118 146 - -
Cmu02g0874 992 FunFam Glutamate receptor 160 321 - -
Cmu02g0874 992 Pfam Ligated ion channel L-glutamate- and glycine-binding site 500 581 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Cmu02g0874 992 SUPERFAMILY Periplasmic binding protein-like II 454 821 - -
Cmu02g0874 992 Gene3D - 473 588 - -
Cmu02g0874 992 Gene3D - 64 408 - -
Cmu02g0874 992 Gene3D - 589 721 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0874 Cmu-Chr2:10908883 Cmu11g1873 Cmu-Chr11:30832073 1.60E-280 dispersed
Cmu02g0873 Cmu-Chr2:10849604 Cmu02g0874 Cmu-Chr2:10908883 0.00E+00 tandem
Cmu02g0874 Cmu-Chr2:10908883 Cmu02g0875 Cmu-Chr2:10990529 2.00E-246 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0874 K05387 - csv:101215485 1641.32