Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0875 ATGACCCTCCCACTGTCGCTACGCGATTCTTGGTTTGGTAGACATTGTCGGAGAACTGCTCGGAGTTGTAAGCGTCGATCAACAATGATTGATGGGATCATCGGCGCAACCAGCACCACGTTGTTAAACAGCTTTTGGGCGTCAAATCGGATGCGTGCATTAATTGGGAACAGGGTCCTATTTTGGCTTAAAATCCTCTCCGATCTCCAGCTCTGTGAAAGCTTGAATCAGCCTGCAGTTGTGAACATTGGTGCAGTTTTCACTTTTGATTCAATTATAGGAAGAGTGGCGAAGGTGGCAATGGAAGCTGCAGTTTCGGATGTGAATGCAGATCCTTCCATTCTCAATGGAACAAAGCTGAATTTGGTCATGGCAGATACACATTGCAATGTTCTCTTGGGTTCTATTGGAGCTTTCCAGGTTCTTGAGAAAGATGTAGTAGCCATAGTTGGGCCTCAATCTTCAGTTGTAGCTCATATGGTTATACAGATTGCTAATAATCTCCAAGTGCCTCTTATATCATATGCTGCCACTGACCCAACTTTATCTGCTCTCCAATTCCCCTTCTTCCTACGAACTACTCAGAGTGATGCCTACCAAATGACTGCTATGGCAGATTTAATTGACTTTTATGAGTGGAAGGAGGTGATCATGATCTTTGTGGATGATGATTATGGTAGAAATGGAATATCCACTTTAACTGATGAGCTTGACAAAAGGATGTTTAAAATTTCTTACAAAATACCCTTACCTTCTCATTTTAATCCCAGTGAAATCACAGTCATGCTCAATAAATCCAAGTTGCTCGGTCCTCGTGTCTATGTTGTTCATGTCAATCCTGATCCTAGATTAAGTATCTTCAAAATAGCCCATCAACTTGATATGATGACAAGTGATTATGTGTGGCTGGCAACAGATTGGCTTTCTACTACCTTAGATTCTGTTCTGCCTGTGCAACAAACCTCTATAGACATCCTTCAAGGTGTGGTTGTACTTCGTCAACATATTCCTGAATCCAACCAACAAACAACATTATGGTCTCGGTTAAGGAAGATGCTGCCAGAAGGCTCCAGAAATTCTTCGTTGAATGTCTATGCTCTTAGTGCCTATGATACGATTCAAGTAGCTGCACGTGCAATTGATAAGTTTCTAAATGAAGGTAGGAGCATTACCTTCTCATTGAAGAACAAGTTTCATGATTTGAATACATCTAGAATGCCCTGGGGAAAGCTCAAAATATTTGATGATGGTGCTCTTCTTTTGAGCATATTGTTGCAGGCAAACTTTACTGGTTTAAGTGGTCAGATTGAGTTTAATTCAGATCGGAACCTTGTCAATAGAGGCTATGAGGTGATCAATATTGATCAGTCGGGACTGCGTAGAGTTGGTTATTGGTCCAATGTCACAGGCTTTACAATCCAATCCCCAGAAACTCTGAAGCAGAAACGAATTAGTTATTCCCACCTGAACCAGGCTCTTGGCAATGTTACCTGGCCTGGTGGAAAGACAGAAAGACCGCGTGGATGGGTGATTGCAGACAATGAAAGACCATTAATAATTGGAGTGCCACGTAGAGTAAGTTTCATTGAATTTGTTACTGCAGTCAATGGAAGCCACGAAAACATTGAAGGATTCTGTATTGATCTGTTCAATGAAGCAAGAAAGCTGGTTCCTTATGATGTTCCTTACAGATTTATACCTTTTGGAAATGGCTACTCCAATCCTAGTTATGATGACCTTGTGAAGAACGTTGCAAATGGTATATTTGATGCAGCTGTTGGAGATATTGCAATTGTTACCAATCGAACAAGGATTGTGGATTTTTCTCAGCCTTTTGCTTCTACCGGGCTTGTTATTGTGGCTCCAATAAAAAATTCAAAGTCAAATGCTTGGGTGTTCCTTAAACCATTTACAACAGAGATGTGGTGCGTAACATCGGCGTCCTTTTTTATGATTGGGGCAGTCATATGGCTTCTTGAGCATCGAGTAAATGATGATTTCCGTGGTCCACCAAAGAGGCAGCTAGTGACAGTAATACTGTTCAGCTTCTCGACATTGTTCAAAACGAATCAGGAAGCTACTGTAAGTCCACTTGGACGTATGGTAATGGTGGTGTGGCTTTTCTTATTGATGGTTATCACGTCAAGCTATACAGCCAGTCTCACTTCAATCCTTACAGTTCAGCAGCTTTCATCTCCCATTAAAGGACTTGATGACTTGATTACTAATGAACAGCCAATTGGCTACCAGGTAGGATCATTTGCGTATAGCTATCTGACCGAGAGTCTTTACCTTCCACGATCGAGGCTTGTATCTCTAGGCTCTCCAGAAGAGTATGAATCAGCACTGCTAAAGGGGCCATTCAAAAAAGGAGGGGTGGCGGCTATTGTAGATGAACTTCCATATATGGAACTGTTCTTATCAGGGAGGAATGATTTCGGAATGATTGGACAGCCATTCACCAAGAGTGGATGGGGATTTGCTTTTCAGAGAGGATCTCCACTTGCGGTAGACATGTCAACTGCAATTCTAAAGCTTTCTGAGAATGGAAAGCTTCAGAAGATCCACGAGAAGTGGTTTTGTAAGATGGGTTGTCCTGGAGAGAGGAGAAGGAAGTCTGAGCCTATCCAGCTTCAGTTGGTCAGCTTCTGGGGTCTGTATCTCTTGTGCGGTGCCTTTTCACTCGTTGCTCTTCTTATATTTTTGCTCCGTATAGTTCGACAATTTGCTCGTTACATACGACAACAGAAGGAATCTTCTCATGCAGAATTGGTGTCATCAAATTCAAACTCAAGCTGGACTCAGGTTATATATAAGTTTATTGACTTTGTTGATGAGAAGGAAGAAGCCATCAAGAGACTTTTTCGAAAGTATGATAATCAGAATCAGGCTAGCCAATAG 2901 41.85 MTLPLSLRDSWFGRHCRRTARSCKRRSTMIDGIIGATSTTLLNSFWASNRMRALIGNRVLFWLKILSDLQLCESLNQPAVVNIGAVFTFDSIIGRVAKVAMEAAVSDVNADPSILNGTKLNLVMADTHCNVLLGSIGAFQVLEKDVVAIVGPQSSVVAHMVIQIANNLQVPLISYAATDPTLSALQFPFFLRTTQSDAYQMTAMADLIDFYEWKEVIMIFVDDDYGRNGISTLTDELDKRMFKISYKIPLPSHFNPSEITVMLNKSKLLGPRVYVVHVNPDPRLSIFKIAHQLDMMTSDYVWLATDWLSTTLDSVLPVQQTSIDILQGVVVLRQHIPESNQQTTLWSRLRKMLPEGSRNSSLNVYALSAYDTIQVAARAIDKFLNEGRSITFSLKNKFHDLNTSRMPWGKLKIFDDGALLLSILLQANFTGLSGQIEFNSDRNLVNRGYEVINIDQSGLRRVGYWSNVTGFTIQSPETLKQKRISYSHLNQALGNVTWPGGKTERPRGWVIADNERPLIIGVPRRVSFIEFVTAVNGSHENIEGFCIDLFNEARKLVPYDVPYRFIPFGNGYSNPSYDDLVKNVANGIFDAAVGDIAIVTNRTRIVDFSQPFASTGLVIVAPIKNSKSNAWVFLKPFTTEMWCVTSASFFMIGAVIWLLEHRVNDDFRGPPKRQLVTVILFSFSTLFKTNQEATVSPLGRMVMVVWLFLLMVITSSYTASLTSILTVQQLSSPIKGLDDLITNEQPIGYQVGSFAYSYLTESLYLPRSRLVSLGSPEEYESALLKGPFKKGGVAAIVDELPYMELFLSGRNDFGMIGQPFTKSGWGFAFQRGSPLAVDMSTAILKLSENGKLQKIHEKWFCKMGCPGERRRKSEPIQLQLVSFWGLYLLCGAFSLVALLIFLLRIVRQFARYIRQQKESSHAELVSSNSNSSWTQVIYKFIDFVDEKEEAIKRLFRKYDNQNQASQ 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10990529 10996652 - CmPI595203_02g008750.1 Cmu02g0875 408924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0875 966 PIRSF IGluLR_plant 52 966 IPR017103 -
Cmu02g0875 966 Gene3D - 526 629 - -
Cmu02g0875 966 CDD GluR_Plant 516 860 - -
Cmu02g0875 966 Gene3D - 196 470 - -
Cmu02g0875 966 Pfam Ligand-gated ion channel 861 891 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cmu02g0875 966 SUPERFAMILY Periplasmic binding protein-like I 77 510 IPR028082 -
Cmu02g0875 966 FunFam Glutamate receptor 196 352 - -
Cmu02g0875 966 Gene3D - 630 762 - -
Cmu02g0875 966 SMART GluR_14 519 862 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cmu02g0875 966 Pfam Bacterial extracellular solute-binding proteins, family 3 539 638 IPR001638 -
Cmu02g0875 966 Gene3D - 99 446 - -
Cmu02g0875 966 FunFam Glutamate receptor 513 630 - -
Cmu02g0875 966 Gene3D - 808 867 - -
Cmu02g0875 966 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 81 923 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cmu02g0875 966 FunFam Glutamate receptor 630 760 - -
Cmu02g0875 966 Coils Coil 944 964 - -
Cmu02g0875 966 FunFam Glutamate receptor 756 864 - -
Cmu02g0875 966 Pfam Receptor family ligand binding region 98 456 IPR001828 -
Cmu02g0875 966 CDD PBP1_GABAb_receptor_plant 82 472 IPR044440 -
Cmu02g0875 966 SUPERFAMILY Periplasmic binding protein-like II 493 860 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0189 Cmu-Chr2:1787955 Cmu02g0875 Cmu-Chr2:10990529 0.00E+00 dispersed
Cmu02g0875 Cmu-Chr2:10990529 Cmu11g1873 Cmu-Chr11:30832073 2.40E-260 dispersed
Cmu02g0874 Cmu-Chr2:10908883 Cmu02g0875 Cmu-Chr2:10990529 2.00E-246 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0875 K05387 - csv:101215715 1674.45