Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0941 ATGCAAGCTTCTCAGCTTCATAGAGGTTCACATATGTCAAAGAGATTATGTTATCAGCCCCTTCAAGAAGTGGATGCCTACTGCTTCTCCCAATTTCAATCTTTAGGTCGCCACTTATATTCCAGTGCCGGCAACCAAAGAGCTCAGTTCAATGTTCAAGACATCGGTGATCGATACTGCACTCTGGAGTCGTCCTCGGGAAGCCACGGCTATGCAGCTCACAACTCAACGTCGACTGTCACTTTCTCACCCAATGGGAGTCCAGTATCGCAACAGGATTCTCGCTCAAATCCTTCTGATCAGCATAATTCCCCTGATAATACATATGGTTCTTCAGTAAGTGGATCCAGCATAACCAATGATATTAGTGATTTTAGGCACAAACTACTGGAATTGGAAACTGTGATGCTTGGTCCTGATTCTGATGTTAGTGATAGTTTTGATAGTATCTACACGGAGGGAACAGACAATCCAGAGATGGGAACTTGGGGACAAGCGGTGGATGCTATTACTAAAAGAAACTTAAAAAAGATCTTGATAGCTTGTGCTAAAGCTGTATCAGATAGTGATGCGTTGATGGCACAATGGCTTATGGATGAGTTGCGAAAGATGGTGTCGGTTTGCGGTGAACCGATGCAGAGGTTGGGAGCGTATATGCTGGAGGGGCTGGTTGCACGGTTAGCCTCCTCGGGCAGTTGCATCTATAAATCTTTGAGATGCAAGGAACCAGCAAGAGCGGAGCTCCTCTCATATATGCACCTTCTTTATGAGGTTTGCCCCTACTTCAAATTTGGATACATGTCAGCAAATGGTGCCATTGCAGAAGCCATGAAAGATGAAGATCGAGTTCACATCATTGATTTCCAAATTTCTCAGGGTACTCAGTGGATCACTTTGATTCAAGCTTTTGCAGGCAGGCCTGGTGGGCCACCTCACATTCGTATAACCGGTATAGATGATCCTGCATCAGCTTATGCTCGTGGAGGCGGGCTAGATATCGTTGGGAAGAGACTTTCCAAGTTAGCGAAGTTATTTAACGTGCCATTTGAGTTTCACTCTGCTGCCATTTCTGGCTGTGATGTTCAGCAAAATAATCTGGGCATTCGACGAGGGGAGGCTTTAGCAGTGAATTTTGCATTCATGCTACACCATATGCCGGATGAAAGCGTAAGCACCGAAAATCATCGAGATAGGCTATTGAGGCTGGTTAAGGGTCTGTCTCCAAAGGTCGTGACACTTGTTGAACAAGAATCCAACACAAACACCGCTGCATTCTATCCCCGGTTCATCGAGACACTGGATTACTACAATGCCATGTTTGAATCAATTGACGTTACTCTTCCAAGACAGCACAAGGAGCGAATTAACATCGAGCAGCATTGTCTAGCCAGGGAAGTTGTCAACATACTAGCATGTGAAGGGGCTGAGAGAGTGGAACGACACGAGCTACTCGGAAAGTGGAGACTGCGATTTGCAATGGCAGGATTTACCCCTTACCCATTAAGCTCTTTGGTGAATGCTACCATCAAAACGTTATTAGATAACTATTCTAACAGCATCACCACCAAGATGCCAGCTGAAAACTCAATTCCATTTGATCGAGACGCAGAGCCTTTTGTTGAGGTTGATCCAACTGGAAGGTTTGGACGATACGACGATCTTCTTGGGTCTGGAGCGGTAAAGAGAGTTTATCGGGCATTCGATCAGGAGGAAGGAATAGAGGTTGCTTGGAATCAGGTTCGATTGAGAAATTTTAGTGGGGATCCAGTGTTCATCAACCGCTTGAGGTCTGAGGTTCAGCTGCTGAGTACTTTAAACAACAAATATATCATTGTTTGTTACAGTGTTTGGAATGACGACGAGCGTAATACGTTGAATTTCATTACCGAGGTGTGCACATCAGGAAATCTGAGAGATTATCGTAAGAAACATCGACATGTGTCAATTAAGGCCTTGAAAAAATGGTCAAAGCAAGTACTCGAGGGATTGGATTATCTTCATACTCATGAGCCTTGCATTATTCACAGAGACCTCAACTGCAGTAACATATTTGTCAATGGGAACATTGGCCAGGTTAAAATAGGCGATCTAGGGTTTGCAGCTATAGTCGGCAGGAGTCATGCTGCACATTCAATCATAGGCACACCAGAGTATATGGCACCAGAGCTGTATGAGGAAGACTACACAGAGATGGTGGATATATACTCCTTTGCGATGTGTTTGCTTGAGATGGTTACGATGGAGATACCATACAGTGAATGTGATAGTGTTGCCAAGATATACAAGAAGGTCACAACTGGAATAAAGCCCCAAGCAATATCAAAAGTGACTGATGATGAAGTCAGGGCTTTCATTGAGAAGTGCATTGCACAGCCAAGGGCAAGACCTTCCGCTTCTGAACTTCTCAAAGATCCATTCTTTGACGAAGTGAGGGATGAAGATTCTGAACAGAGTTATTAA 2460 44.39 MQASQLHRGSHMSKRLCYQPLQEVDAYCFSQFQSLGRHLYSSAGNQRAQFNVQDIGDRYCTLESSSGSHGYAAHNSTSTVTFSPNGSPVSQQDSRSNPSDQHNSPDNTYGSSVSGSSITNDISDFRHKLLELETVMLGPDSDVSDSFDSIYTEGTDNPEMGTWGQAVDAITKRNLKKILIACAKAVSDSDALMAQWLMDELRKMVSVCGEPMQRLGAYMLEGLVARLASSGSCIYKSLRCKEPARAELLSYMHLLYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQISQGTQWITLIQAFAGRPGGPPHIRITGIDDPASAYARGGGLDIVGKRLSKLAKLFNVPFEFHSAAISGCDVQQNNLGIRRGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTLVEQESNTNTAAFYPRFIETLDYYNAMFESIDVTLPRQHKERINIEQHCLAREVVNILACEGAERVERHELLGKWRLRFAMAGFTPYPLSSLVNATIKTLLDNYSNSITTKMPAENSIPFDRDAEPFVEVDPTGRFGRYDDLLGSGAVKRVYRAFDQEEGIEVAWNQVRLRNFSGDPVFINRLRSEVQLLSTLNNKYIIVCYSVWNDDERNTLNFITEVCTSGNLRDYRKKHRHVSIKALKKWSKQVLEGLDYLHTHEPCIIHRDLNCSNIFVNGNIGQVKIGDLGFAAIVGRSHAAHSIIGTPEYMAPELYEEDYTEMVDIYSFAMCLLEMVTMEIPYSECDSVAKIYKKVTTGIKPQAISKVTDDEVRAFIEKCIAQPRARPSASELLKDPFFDEVRDEDSEQSY 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13252983 13260697 + CmPI595203_02g009410.1 Cmu02g0941 408990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0941 819 Gene3D Phosphorylase Kinase; domain 1 534 630 - -
Cmu02g0941 819 Pfam Protein kinase domain 553 807 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g0941 819 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 536 809 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cmu02g0941 819 ProSiteProfiles Protein kinase domain profile. 549 807 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g0941 819 MobiDBLite consensus disorder prediction 66 115 - -
Cmu02g0941 819 ProSiteProfiles GRAS family profile. 166 546 IPR005202 -
Cmu02g0941 819 SUPERFAMILY Protein kinase-like (PK-like) 542 808 IPR011009 -
Cmu02g0941 819 FunFam Probable serine/threonine-protein kinase WNK1 534 630 - -
Cmu02g0941 819 FunFam probable serine/threonine-protein kinase WNK9 632 813 - -
Cmu02g0941 819 Pfam GRAS domain family 175 519 IPR005202 -
Cmu02g0941 819 CDD STKc_WNK 547 807 - -
Cmu02g0941 819 Gene3D Transferase(Phosphotransferase) domain 1 632 813 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2083 Cmu-Chr1:33725065 Cmu02g0941 Cmu-Chr2:13252983 6.60E-159 dispersed
Cmu02g0941 Cmu-Chr2:13252983 Cmu10g1269 Cmu-Chr10:5590385 3.40E-167 dispersed
Cmu02g0941 Cmu-Chr2:13252983 Cmu10g2833 Cmu-Chr10:34841085 7.50E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5732 PF03514 GRAS 9.70E-124 CL0063 Cmu TF
75296 PF03514 GRAS 9.70E-124 CL0063 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0941 K27748 - csv:101221914 997.653