Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1026 ATGCCGAAGGGTTTGAAGAGTAAATGTCAGTCTACGTCTCATCAGCTTTTGAAGGAAAAAGCAAAGAACCGTGTTAATGACCTTCAAGGGATATTCACTAATCTTCAAAATGCAAGAAAGGAGAGTCGTACAACTGACGTTGCTGTTTTGGAGGAGCAAGTCCATCAGATGCTCAGGGAGTGGAATGCTGAGCTTAATGAACCGTCACCTGCCTCTTCATTTGTTGAGGGTAGTCTTGGATCATTCTCGCAAGAGTTAGCCCGTCTTCTTGAGCATTGTGATGAGGAAGATGATGCAACTAGTATATTGGCTGAACCAAAGGCTGAGACTGAGCTTCATTGCGTTCTTGCCAGCAATCCGTCAAATTGTGTACAGGATGGTTTTTGTATTCCAGAGCTCCAACAGGATAGTTTTCTTGGGTTTGAGGAGTGCAAAGTCTCGCCTCCAGATCTACAGAATCATTCGTTTTACAAATTGGACATGGCTACTCAGTCTATTTGTCAAAGTTTCAAATTAGATCAAAACTTCGAGAACTGCCATATATTGAACTCACATCCAGAGTTCGACTATGGGGTTCTTATTGGGGCATCTGATGTGGGAGACTTTAGTCAGGACACAAAGCCCAGTATTCTCCCAAATATCTCACCCCCACCATCTGCTTTTATGGGCCCAATATGTGCTCTATGGGATTGTTTCAGACCTGCTCAAGGATCTAAATGGTGTCAGGATTATTGCAGTAGCTGTCATTCTGTTCTTGCTATAAACGAAGGCCTTCCTGGAATGATTCCAATATTGCGCCCTGGGGGAATTGGCTTTAAGGATGGTCCTTTGTTTGCTGCTCTTCATGCAAAGACACAGGCCAAAGAAGTTGGAATACCCATATGTGATGGTGCTGCAACAAGGAAATCTCCATGGAATGCTCCTGAGCTTTTTGATATTACATTTCTTGAGGGGGAGACAATCAGGGAATGGCTCTACTTCGACAAGCCTAGAAGAGCCTTTGAGAGTGGCAATCGAAGGCAAAGGTCATTGCCGGATTATAGTGGCCGTGGTTGGCATGAATCAAGGAAGCTGGTGATGAAGGAGTTTGGTGGTCAGAAGAAGTCTTATTACATGGATCCACAGCCATCAAGCTCTCTTGAATGGCATTTGTACGAATATGATATCACCAATTATGATTCATTCGCATTATATAGGCTGGAACTCAAGCATGTTGATGCAAAGAAGATTCCAAAAGGAAAACTGGCAGCTGATCCTCTGGCTGATCTGCAGAAGAAGATGGGAAGGCTTACTGCAGAGGGCCCTGTTGAGCTTGGACAACCAGTTAAAGGTAAGATTACGACAAAGACGAATAATAAAAAGCTCGATACTGCAAACATCAACCTTGCTCCGCATCATCAGAATATGACGAACACCAACTGA 1422 43.81 MPKGLKSKCQSTSHQLLKEKAKNRVNDLQGIFTNLQNARKESRTTDVAVLEEQVHQMLREWNAELNEPSPASSFVEGSLGSFSQELARLLEHCDEEDDATSILAEPKAETELHCVLASNPSNCVQDGFCIPELQQDSFLGFEECKVSPPDLQNHSFYKLDMATQSICQSFKLDQNFENCHILNSHPEFDYGVLIGASDVGDFSQDTKPSILPNISPPPSAFMGPICALWDCFRPAQGSKWCQDYCSSCHSVLAINEGLPGMIPILRPGGIGFKDGPLFAALHAKTQAKEVGIPICDGAATRKSPWNAPELFDITFLEGETIREWLYFDKPRRAFESGNRRQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPSSSLEWHLYEYDITNYDSFALYRLELKHVDAKKIPKGKLAADPLADLQKKMGRLTAEGPVELGQPVKGKITTKTNNKKLDTANINLAPHHQNMTNTN 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16861181 16863589 - CmPI595203_02g010260.1 Cmu02g1026 409075

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1026 473 Coils Coil 18 38 - -
Cmu02g1026 473 PANTHER TRANSCRIPTION FACTOR VOZ1 1 465 IPR039277 GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0043565(PANTHER)|GO:0045893(PANTHER)|GO:0048578(PANTHER)|GO:0048578(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1026 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2282 Cmu-Chr1:35105186 Cmu02g1026 Cmu-Chr2:16861181 4.30E-133 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu01g2282 . 199 646 VOZ-9 Transcription Factor Family AT1G28520 71.6 1.9e-186 649.0
Cmu02g1026 . 6 437 VOZ-9 Transcription Factor Family AT1G28520 59.3 1.7e-134 476.5
Cmu01g2282 . 199 586 VOZ-9 Transcription Factor Family AT2G42400 51.7 2.7e-102 369.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005492 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 5 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5737 None None None None Cmu TF