Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1061 ATGGCATTTGACAGAGAACCAAACACAACAAACTCTCCTGGAAATGAATCAAAAGAAGACAGAAAAAGCTGGCAATCTTCTTCCAAACGGGCAATATCTACAGAAGCAAACATAGCAGAAAGGGCGGCGGAGTGGGGACTGGTGGTGGAGACAAACGTGGAAGAAGGGAGTTTCAAGGCCATCGTGGGGAGAGCATCAGGTGAAGGAGGGGGCAGCAAAAGATCATCAGAGAAAATCAGTGGCACAGGAAGAACTTCAAGCTTTGGCAAGGAAACCTCTGGAGTTTTCCCAAGGGTATCACAAGAGTTGAAGGACGCTCTGGCTTCTTTAGAACAGACATTTGTAGTCTCTGATGCCACCAAACCAGACTGCCCCATCATGTATGCGAGCAGTGGCTTCTTTGGCATGACTGGTTATGCTTCAGAGGAAGTCATTGGAAGGAACTGCCGTTTTCTTCAGGGACCAGAGACGGACCAGAAAGAAGTTGACAAAATCCGATATGCAGTGAAAAACGGCAAAAGCTACTGTGGGAGGCTTTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTTCTGACAGTCACACCCATCAAGGATGACAATGGCAATACTATCAAATTTATTGGAATGCAGGTAGAAGTAAGCAAATACACAGAAGGCATAAATGATAAAGCATTACGACCGAATGGGTTGCCAAAGTCATTAATCCGCTATGATGCTCGCCAGAAGGAAAAGGCAATGGATTCCATCACAGAGGTCGTTCAGACTGTGAAGAATCCTCGATCTCATAATCGAGCTATGAGTCATGACACTACCAGAAAAAAAGAAGATTTGGAAAAGTTCAATCTTGACTATGTTCTTCCAAAGTCGGTTGAAGCTGCAAATGATACACCGGGTAGACAAACTCCTCAACAGGACCTCAAAGATGATGGGTTAGGCAAGAAACCTAGGTTATCAAGTCGAGTTTCTCTAATGGGTTTCAAAGGGAAATCTCTAAGCAGTTCAAGGAAGCTTGAAGTAACAGCCTTTGAACCAGAAATTTTGATGTCCGACGAAGTAGAACGGACTGATAGTTGGGACCGTGCTGAAAGAGAAAAGGATATTCGCCAAGGAATTGATTTAGCTACCACATTGGAGAGAATTGAGAAAAATTTTGTCATTACTGATCCAAGGCTTCCTGATAATCCAATTATATTTGCATCCGACAGCTTTCTTGAATTGACGGAATATACTCGTGAGGAAATTTTGGGACGAAACTGTAGGTTTCTTCAAGGACCTGAAACAGATCAAGAAACTGTCTCAAAGATAAGGGATGCAATTAGGGAACAAAGAGAAATAACTGTTCAGTTGATCAACTATACCAAGACTGGTAAAAAGTTCTGGAATTTATTCCACTTGCAACCAATGCGTGATGAAACGGGAGAGCTTCAATATTTTATTGGTGTACAACTAGATGGAAGTGGTCACGTGGAACCTTTGCAAAACCGCCTTTCTGAGAACGCAGAGCTGCAAAGTGCCAAGCTGGTTAAAGCCACTGCAGAGAATGTTGATGAGGCTGTTCGTGAACTTCCCGATGCCAACTTGAGACCAGAAGATTTGTGGGCACTTCATTCTCAACCAGTCTTCCCAAGGCCTCACAAGAAGCACAATTCTTCTTGGAGTGCTATACAGAAGATTATCCGACGTGGTGAAAAAATTGGACTCCAACATTTTAAGCCAATTAAACCACTGGGTTGTGGAGACACTGGCAGTGTTCATCTGGTGGAACTTCTAGGTTCAAGCGAACTTTATGCCTTGAAAGCAATGGAGAAATCAGCACTTTTGAATCGAAACAAGGTCCACAGAGCATGCATTGAAAGGCAAATCATTGCGCTTCTGGATCATCCTTTTCTTCCAACACTCTACACTTCATTTGAGACCCCTACACACGTTTGTTTGATAACAGACTTCTGCCCTGGTGGGGAGTTATTCGCATTGCTTGATAAGCAACCAATGAAAATGTTTAAAGAGGATTCTGCAAGGTTCTATGCTGCAGAGGTCGTCATTGGCTTGGAATATCTTCACTGTCTAGGAATCATTTACCGGGATCTGAAGCCTGAAAATATTCTTCTCCAGAAGGATGGGCATGTTACGCTTGCTGACTTCGATTTATCACTTGTAACATCCTGCAAACCGCAGATTGTGAAGTATCCATTGCATCATGGTAGAAGGAGATCTCGAAGTCAACCACCACCAGTATTTGTTGCAGAGCCGATCACGCAATCAAATTCTTTTGTTGGAACCGAAGAGTATATTGCTCCTGAAATTATAACAGGGGAAGGCCACAGCAGCTCTATCGATTGGTGGGCTCTTGGTATATTGTTATATGAGATGCTTTATGGTCGCACGCCTTTCAGAGGAAAGAACAGGCAGAAGACTTTTGGTAACATCTTGCACAAAGATCTCACTTTCCCGAGTAGCATTCAGGTGAGTCTTGCAGCAAGGCAGCTAATCAATGCATTGCTACAAAGAGACCCCGCCAGACGTTTAGGATCAAGTACAGGTGCAAATGAAATCAAACAGCACCCCTTTTTCCAATCAATCAACTGGCCATTGATCCGGTGTATGGTCCCGCCACCATTAGAATCACCTCTTCACCTAACTGGAAAAGATGGAACAACCAAGAACATAAACTGGGAAGATGATGGTGTGCTTAGCTCAATGGATATGGATTTCTTCTGA 2724 43.47 MAFDREPNTTNSPGNESKEDRKSWQSSSKRAISTEANIAERAAEWGLVVETNVEEGSFKAIVGRASGEGGGSKRSSEKISGTGRTSSFGKETSGVFPRVSQELKDALASLEQTFVVSDATKPDCPIMYASSGFFGMTGYASEEVIGRNCRFLQGPETDQKEVDKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNTIKFIGMQVEVSKYTEGINDKALRPNGLPKSLIRYDARQKEKAMDSITEVVQTVKNPRSHNRAMSHDTTRKKEDLEKFNLDYVLPKSVEAANDTPGRQTPQQDLKDDGLGKKPRLSSRVSLMGFKGKSLSSSRKLEVTAFEPEILMSDEVERTDSWDRAEREKDIRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQETVSKIRDAIREQREITVQLINYTKTGKKFWNLFHLQPMRDETGELQYFIGVQLDGSGHVEPLQNRLSENAELQSAKLVKATAENVDEAVRELPDANLRPEDLWALHSQPVFPRPHKKHNSSWSAIQKIIRRGEKIGLQHFKPIKPLGCGDTGSVHLVELLGSSELYALKAMEKSALLNRNKVHRACIERQIIALLDHPFLPTLYTSFETPTHVCLITDFCPGGELFALLDKQPMKMFKEDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVTLADFDLSLVTSCKPQIVKYPLHHGRRRSRSQPPPVFVAEPITQSNSFVGTEEYIAPEIITGEGHSSSIDWWALGILLYEMLYGRTPFRGKNRQKTFGNILHKDLTFPSSIQVSLAARQLINALLQRDPARRLGSSTGANEIKQHPFFQSINWPLIRCMVPPPLESPLHLTGKDGTTKNINWEDDGVLSSMDMDFF 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20577061 20590763 - CmPI595203_02g010610.1 Cmu02g1061 409110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1061 907 ProSiteProfiles PAC domain profile. 445 499 IPR000700 -
Cmu02g1061 907 FunFam LOV domain-containing protein 571 655 - -
Cmu02g1061 907 MobiDBLite consensus disorder prediction 292 318 - -
Cmu02g1061 907 Gene3D PAS domain 360 524 - -
Cmu02g1061 907 Gene3D PAS domain 113 283 - -
Cmu02g1061 907 NCBIfam PAS domain S-box protein 396 486 IPR000014 -
Cmu02g1061 907 NCBIfam PAS domain S-box protein 126 216 IPR000014 -
Cmu02g1061 907 FunFam LOV domain-containing protein 360 524 - -
Cmu02g1061 907 MobiDBLite consensus disorder prediction 1 31 - -
Cmu02g1061 907 CDD PAS 386 486 IPR000014 -
Cmu02g1061 907 SUPERFAMILY PYP-like sensor domain (PAS domain) 120 212 IPR035965 -
Cmu02g1061 907 ProSiteProfiles PAS repeat profile. 371 444 IPR000014 -
Cmu02g1061 907 ProSiteProfiles PAS repeat profile. 99 172 IPR000014 -
Cmu02g1061 907 ProSitePatterns Serine/Threonine protein kinases active-site signature. 693 705 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu02g1061 907 SMART pac_2 448 490 IPR001610 -
Cmu02g1061 907 SMART pac_2 176 218 IPR001610 -
Cmu02g1061 907 ProSiteProfiles Protein kinase domain profile. 572 859 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g1061 907 SMART serkin_6 572 859 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g1061 907 Pfam Protein kinase domain 575 859 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g1061 907 Gene3D Transferase(Phosphotransferase) domain 1 656 875 - -
Cmu02g1061 907 PANTHER FLIPPASE KINASE 1-RELATED 519 878 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cmu02g1061 907 CDD PAS 126 215 IPR000014 -
Cmu02g1061 907 FunFam Putative LOV domain-containing protein 656 871 - -
Cmu02g1061 907 MobiDBLite consensus disorder prediction 73 93 - -
Cmu02g1061 907 FunFam Putative LOV domain-containing protein 113 269 - -
Cmu02g1061 907 Pfam PAS domain 120 216 IPR000014 -
Cmu02g1061 907 Pfam PAS domain 394 486 IPR000014 -
Cmu02g1061 907 CDD STKc_phototropin_like 570 878 - -
Cmu02g1061 907 ProSitePatterns Protein kinases ATP-binding region signature. 578 601 IPR017441 GO:0005524(InterPro)
Cmu02g1061 907 SUPERFAMILY Protein kinase-like (PK-like) 549 884 IPR011009 -
Cmu02g1061 907 SMART pas_2 373 442 IPR000014 -
Cmu02g1061 907 SMART pas_2 101 170 IPR000014 -
Cmu02g1061 907 MobiDBLite consensus disorder prediction 63 93 - -
Cmu02g1061 907 Gene3D Phosphorylase Kinase; domain 1 571 655 - -
Cmu02g1061 907 ProSiteProfiles PAC domain profile. 173 227 IPR000700 -
Cmu02g1061 907 SUPERFAMILY PYP-like sensor domain (PAS domain) 387 486 IPR035965 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1061 Cmu-Chr2:20577061 Cmu10g2144 Cmu-Chr10:27438753 7.50E-99 dispersed
Cmu02g2063 Cmu-Chr2:34274415 Cmu02g1061 Cmu-Chr2:20577061 3.40E-302 transposed
Cmu05g2204 Cmu-Chr5:31524223 Cmu02g1061 Cmu-Chr2:20577061 2.10E-47 transposed
Cmu11g1221 Cmu-Chr11:23855730 Cmu02g1061 Cmu-Chr2:20577061 8.50E-06 transposed
Cmu01g2250 Cmu-Chr1:34863101 Cmu02g1061 Cmu-Chr2:20577061 5.30E-20 wgd
Cmu02g0315 Cmu-Chr2:2865665 Cmu02g1061 Cmu-Chr2:20577061 2.00E-273 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75297 PF00069 Pkinase 2.00E-61 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1061 K20715 - csv:101215355 1716.05