Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1084 ATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTGGGTGTCATCCTTGTAAATACAGCCTTATCAATTTCTATCTTCAAAGGGATAGTTCGGTCAATTCTCCATGTTGTTGGCATCCATCTCTCGTCGTCGCCTACATTACCATCTTCACCAGATTCCATGGAGAATGCTCCTGAATCCATAGAATTCCATCTTAACCCAAATGGAAGTTACATTGAAGAGTTCCACAGCCGAATTCCAGCAATTCTGTTCGACAAAGTTCATAGCTGCAAATGGCTCGAACACGACTGCTCGGTCTGCCTAACCCAGTTTGAACCTGAATCAGAGATAAACCATTTATCTTGTGGCCATCTCTTCCACAGAGTGTGCTTGGAGAAGTGGTTGGACTACTGGAACCTTACATGTCCACTTTGTCGAACTCCACTAGTGCCCGAAGAAGACACAGCTTCCTGCTTTTGTCTTGAGACTGGCTTTTACATTTCGAGTTAA 495 45.25 MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFHSRIPAILFDKVHSCKWLEHDCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLVPEEDTASCFCLETGFYISS 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21325947 21326659 - CmPI595203_02g010840.1 Cmu02g1084 409133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1084 164 Pfam Ring finger domain 98 141 IPR001841 -
Cmu02g1084 164 SMART ring_2 99 140 IPR001841 -
Cmu02g1084 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 146 IPR013083 -
Cmu02g1084 164 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Cmu02g1084 164 SUPERFAMILY RING/U-box 88 147 - -
Cmu02g1084 164 PANTHER - 1 151 IPR044249 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1084 Cmu-Chr2:21325947 Cmu06g0341 Cmu-Chr6:3996013 2.10E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1084 K16285 - csv:101216645 315.849