Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1085 ATGGGTTTCATGTGTGATTTTTGTGGGGATCAAAGGTCAATGGTGTACTGCCGATCTGATGCTGCTTGTTTGTGCTTATCGTGTGATCGTAATGTCCATTCAGCTAACGCCTTGTCGAGGCGTCATACACGAACGCTGCTGTGTGAAAGATGCCATTCACAACCCTCCACGGTAAGGTGTATTGATGAGAGGCTTTCTCTCTGTCAAAATTGTGACTTGACAGGTCATGGAACATCTACCCTTGCTTCCTCATCACACAAGAGGCAAACCATCAATTGTTACTCTGGTTGTCCATCAGCTGCAGAACTTTCTTCCATATGGTCCTTTGTTTTGGATGTTCCCTCTGTAAATGATGCTTGTGAGAAAGAGTTGGGATTGATGAGCATTGCTGAGACTGATTTGATGGGCACCTGGAGCCTTTCAGAGAACAACGCCGGTCAAAGAATGCCTGGGTCAACTGAAGCCAGTGATGTTTGCAGCAGGGAAAAGTCAAATGCTTTGGTTGGATCATCTTCACTCATTGATTTTGGCTCTAGGCCTCACACTTCAGATCAGCCAGTTGAATTTGCTAATGTGGCTTTACCTAAGTTTTGCTGTCCTGGAACAAAAGTTGCTGAATTCTGTGGTGAGGATGATGACCTCTACAAGGAGTTTGATATGGATGAAATGGATTTGAATCTTGAAAATTATGAGGAGCTATTTAGTATGAGCCTTAATCATTCTGAAGAATTTTTCGAGAATGGTGGAATTGATAGCTTTTTTGAGGCAAAAGGCCTGTCTTTTGAAGATTCAGTTTGCCACAGTGCTGTTGCTGCAGAGGGTTCTTCCATCGGAGTGGTCAAACCAATGCAGCCAGCCTGCAGCAACGGTGCCTCTGCTGACTCAGTGATGAGTGCTAAAACAGAACCGGTTCTCTGTTTTAATTCAAGGCAAGCCCAATCGGGTGTGTCGTTTTCTGGCCTTACTGGTGAGAGTAGTGCTGGTGATCATCAAGACTGTGGAGCCTCTTCGATGCTCCTAATGGGTGAGCCTCCATGGTGTGCCCCTGGCGCTGAAAGTTCCTTCCCATCTTCTGATCGTAATAGCGCTGTTCTGCGTTATAAGGAGAAAAAGAAGACACGCAAGTTTGAGAAAACAGTGAGATACGCGACTCGCAAAGCGAGAGCTGATGTCAGAAGGCGTGTGAAGGGACGGTTTGTGAAGGCTGGAGAGGCCTATGATTACGACCCACTGAACCAGGCTAGAAGCTGCTGA 1254 46.17 MGFMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHTRTLLCERCHSQPSTVRCIDERLSLCQNCDLTGHGTSTLASSSHKRQTINCYSGCPSAAELSSIWSFVLDVPSVNDACEKELGLMSIAETDLMGTWSLSENNAGQRMPGSTEASDVCSREKSNALVGSSSLIDFGSRPHTSDQPVEFANVALPKFCCPGTKVAEFCGEDDDLYKEFDMDEMDLNLENYEELFSMSLNHSEEFFENGGIDSFFEAKGLSFEDSVCHSAVAAEGSSIGVVKPMQPACSNGASADSVMSAKTEPVLCFNSRQAQSGVSFSGLTGESSAGDHQDCGASSMLLMGEPPWCAPGAESSFPSSDRNSAVLRYKEKKKTRKFEKTVRYATRKARADVRRRVKGRFVKAGEAYDYDPLNQARSC 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21481918 21484995 - CmPI595203_02g010850.1 Cmu02g1085 409134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1085 417 Pfam CCT motif 360 402 IPR010402 GO:0005515(InterPro)
Cmu02g1085 417 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cmu02g1085 417 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cmu02g1085 417 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 407 - -
Cmu02g1085 417 CDD Bbox1_BBX-like 5 47 IPR049808 -
Cmu02g1085 417 ProSiteProfiles Zinc finger B-box type profile. 43 91 IPR000315 GO:0008270(InterPro)
Cmu02g1085 417 ProSiteProfiles CCT domain profile. 360 402 IPR010402 GO:0005515(InterPro)
Cmu02g1085 417 CDD Bbox1_BBX-like 47 91 IPR049808 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0306 Cmu-Chr2:2780743 Cmu02g1085 Cmu-Chr2:21481918 2.30E-123 dispersed
Cmu02g0856 Cmu-Chr2:10340237 Cmu02g1085 Cmu-Chr2:21481918 5.90E-32 dispersed
Cmu02g1085 Cmu-Chr2:21481918 Cmu05g2293 Cmu-Chr5:32275409 9.90E-14 dispersed
Cmu02g1085 Cmu-Chr2:21481918 Cmu11g1240 Cmu-Chr11:24326424 1.20E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5741 PF06203 CCT 6.50E-16 CL0281 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1085 - - - 0.0