Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1085 ATGGGTTTCATGTGTGATTTTTGTGGGGATCAAAGGTCAATGGTGTACTGCCGATCTGATGCTGCTTGTTTGTGCTTATCGTGTGATCGTAATGTCCATTCAGCTAACGCCTTGTCGAGGCGTCATACACGAACGCTGCTGTGTGAAAGATGCCATTCACAACCCTCCACGGTAAGGTGTATTGATGAGAGGCTTTCTCTCTGTCAAAATTGTGACTTGACAGGTCATGGAACATCTACCCTTGCTTCCTCATCACACAAGAGGCAAACCATCAATTGTTACTCTGGTTGTCCATCAGCTGCAGAACTTTCTTCCATATGGTCCTTTGTTTTGGATGTTCCCTCTGTAAATGATGCTTGTGAGAAAGAGTTGGGATTGATGAGCATTGCTGAGACTGATTTGATGGGCACCTGGAGCCTTTCAGAGAACAACGCCGGTCAAAGAATGCCTGGGTCAACTGAAGCCAGTGATGTTTGCAGCAGGGAAAAGTCAAATGCTTTGGTTGGATCATCTTCACTCATTGATTTTGGCTCTAGGCCTCACACTTCAGATCAGCCAGTTGAATTTGCTAATGTGGCTTTACCTAAGTTTTGCTGTCCTGGAACAAAAGTTGCTGAATTCTGTGGTGAGGATGATGACCTCTACAAGGAGTTTGATATGGATGAAATGGATTTGAATCTTGAAAATTATGAGGAGCTATTTAGTATGAGCCTTAATCATTCTGAAGAATTTTTCGAGAATGGTGGAATTGATAGCTTTTTTGAGGCAAAAGGCCTGTCTTTTGAAGATTCAGTTTGCCACAGTGCTGTTGCTGCAGAGGGTTCTTCCATCGGAGTGGTCAAACCAATGCAGCCAGCCTGCAGCAACGGTGCCTCTGCTGACTCAGTGATGAGTGCTAAAACAGAACCGGTTCTCTGTTTTAATTCAAGGCAAGCCCAATCGGGTGTGTCGTTTTCTGGCCTTACTGGTGAGAGTAGTGCTGGTGATCATCAAGACTGTGGAGCCTCTTCGATGCTCCTAATGGGTGAGCCTCCATGGTGTGCCCCTGGCGCTGAAAGTTCCTTCCCATCTTCTGATCGTAATAGCGCTGTTCTGCGTTATAAGGAGAAAAAGAAGACACGCAAGTTTGAGAAAACAGTGAGATACGCGACTCGCAAAGCGAGAGCTGATGTCAGAAGGCGTGTGAAGGGACGGTTTGTGAAGGCTGGAGAGGCCTATGATTACGACCCACTGAACCAGGCTAGAAGCTGCTGA 1254 46.17 MGFMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHTRTLLCERCHSQPSTVRCIDERLSLCQNCDLTGHGTSTLASSSHKRQTINCYSGCPSAAELSSIWSFVLDVPSVNDACEKELGLMSIAETDLMGTWSLSENNAGQRMPGSTEASDVCSREKSNALVGSSSLIDFGSRPHTSDQPVEFANVALPKFCCPGTKVAEFCGEDDDLYKEFDMDEMDLNLENYEELFSMSLNHSEEFFENGGIDSFFEAKGLSFEDSVCHSAVAAEGSSIGVVKPMQPACSNGASADSVMSAKTEPVLCFNSRQAQSGVSFSGLTGESSAGDHQDCGASSMLLMGEPPWCAPGAESSFPSSDRNSAVLRYKEKKKTRKFEKTVRYATRKARADVRRRVKGRFVKAGEAYDYDPLNQARSC 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21481918 21484995 - CmPI595203_02g010850.1 Cmu02g1085 409134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1085 417 Pfam CCT motif 360 402 IPR010402 GO:0005515(InterPro)
Cmu02g1085 417 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cmu02g1085 417 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cmu02g1085 417 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 407 - -
Cmu02g1085 417 CDD Bbox1_BBX-like 5 47 IPR049808 -
Cmu02g1085 417 ProSiteProfiles Zinc finger B-box type profile. 43 91 IPR000315 GO:0008270(InterPro)
Cmu02g1085 417 ProSiteProfiles CCT domain profile. 360 402 IPR010402 GO:0005515(InterPro)
Cmu02g1085 417 CDD Bbox1_BBX-like 47 91 IPR049808 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1085 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0306 Cmu-Chr2:2780743 Cmu02g1085 Cmu-Chr2:21481918 2.30E-123 dispersed
Cmu02g0856 Cmu-Chr2:10340237 Cmu02g1085 Cmu-Chr2:21481918 5.90E-32 dispersed
Cmu02g1085 Cmu-Chr2:21481918 Cmu05g2293 Cmu-Chr5:32275409 9.90E-14 dispersed
Cmu02g1085 Cmu-Chr2:21481918 Cmu11g1240 Cmu-Chr11:24326424 1.20E-11 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu08g1327 . 6 337 C2C2-CO-like Transcription Factor Family AT5G15850 50.6 1.6e-41 167.2
Cmu08g1327 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.7 3.5e-84 308.9
Cmu06g1365 . 20 375 C2C2-CO-like Transcription Factor Family AT5G24930 50.9 2.6e-58 223.0
Cmu06g1365 . 1 375 C2C2-CO-like Transcription Factor Family AT5G57660 50.8 4.6e-68 255.4
Cmu08g1327 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 51.0 4.9e-54 208.8
Cmu02g1085 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.4 6.9e-91 331.3
Cmu02g0306 . 83 489 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 1.7e-89 326.6
Cmu02g1085 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.6 2.4e-88 322.8
Cmu02g0306 . 83 489 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 1.8e-86 316.6
Cmu02g1085 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.6 2.4e-88 322.8
Cmu02g0306 . 83 489 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 1.8e-86 316.6
Cmu02g0501 . 1 208 C2C2-CO-like Transcription Factor Family AT1G75540 54.7 8.1e-51 198.0
Cmu11g0403 . 1 184 C2C2-CO-like Transcription Factor Family AT1G75540 52.5 8.1e-43 171.4
Cmu07g1002 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 50.6 1.4e-76 283.5
Cmu07g0835 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.1 9.7e-56 213.4
Cmu01g1950 . 1 107 C2C2-CO-like Transcription Factor Family AT2G21320 81.3 5.7e-48 187.6
Cmu07g0835 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 6.4e-58 220.7
Cmu01g1950 . 1 114 C2C2-CO-like Transcription Factor Family AT4G38960 79.1 5.5e-49 191.0
Cmu02g0501 . 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 60.4 8.0e-56 214.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5741 PF06203 CCT 6.50E-16 CL0281 Cmu TF