Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1115 ATGGATTTCTCTCTCAAGTCTTTCAAATCTCATGCCTCTTACAAGTATGTGAGGAAGCTTTCTGGGGCAGATGCTACTCAAGATCAAGAGCAACTTCCCATTCTTTCCCATCAGCACCACTCCACTATGCCGGTCTCCGATGCATCTGATCGGAAAGAGTTTATCGTCAAGGTCGACCAGGCCGATGCTTCGAGTAATGCTTCGTTGAGAGCTATGGAGCCGGTGAACACCAGTGGGAGGATTTGGCGGGAGTCCAGCTATGATTTCTGGAATGATAGTGATAATAGACGGAATAATGGTGAAGTTATTAGTGGAGATGGTGGTGGTAGGAGTGAGGATTTTGAGTTTAGGCAAGACAGGAAGGGTGTGGAAGATCCGCCGTCGAAGCTTATTGGACAGTTTCTTCACAAGCAGAAGGCGTCGGGAGAGATGTCTTTAGATATGGATATGGAAATGCTGGAACTACCACAGGATAAGACTTTGCTTCCTGTGGTGGCGGAATCTCCGATGCGACGGAGCTCGAGAGAGTTGAAGGTCGCTTTCGAGTCTATTTCAGAAATTTCTGAAAATGATTCGATGCGAAGACGGCACAGAGACTCTCTGCCTGTTGATGAAGAACATAGAGTACAGCAACCGCAGCAGCGTGATCGTCGAGCGTATGGCAGCAATGGTGAAGATGATAGTGCTGCTGAGGTCTTGAGATGCACATCTAATTCGTCCTTCGATAGAGATGTACCGTTCCAGAGGAAATCTAGCTTGCTGAGGGCTAAAACTAAGTCTAGATTGCTAGATCCACCTGAACACCAAGACCGGAGGTCAGGGCGTGTACCAAAATCAGGGCAAGTTCGCTCTGGTTTGCTGTCAAAAACCTTAGATGAGGAAGACGATGATCCATTCTTGGAAGAAGATCTTCCTGATGAGTATAAGAAAGCTAATCTCGGTGTTCTGACTCTGTTACAGTGGGCGAGTTTGATTTTGATAATCGCAGCATTGATTTGCACTTTGACAATTCGTTACTGGAGGAGAAAGAAACTATGGAAGCTTGAACTATGGAAATGGGAGGTTATGATTCTTGTTCTGATATGTGGAAGGCTGGTTTCTGGTTGGGGGATTAGGATAATCGTCTTCTTCATTGAAAGGAACTTTCTACTGCGTAAGAGGGTTCTATACTTTGTTTACGGAGTCAGAAAGGCCGTCCAGAATTGTCTTTGGTTGGGTCTAGTTTTAATTGCTTGGAACTTCCTGTTTGATGAAAAAGTTCAAAGAGAAGTAAAAAGCAATGTCCTAGAGTACGTGACCAAAGTATTGGTATGTCTTCTTGTAAGCACTTTGGTTTGGCTTGTAAAAACGCTGATGGTGAAGATTTTGGCCTCTTCTTTCCATGTGAGTACATATTTTGATAGGATTCAAGATGCATTGTTTAACCAATATGTAATTGAGACACTGTCAGGGCCTCCATTGATAGAGATTCAGAGGAACGAGGAAGAAGAAGAGAGACTTGCAGAAGAGGTTACAAAGTTACAGAACGCAGGGGCTACCATCCCTCCTGATTTAAGGGCAACTGCCTTTTCAACAACTCAAAAGGGTGTGAGGGTGATAGGGAGTGGAAGGTTGCAGAAAAGTCCTCGTGGAAGAAGTGACAAGCTATCTAGGACACTGTCTAAAGAGGGTGATGAAGGTATAACAATTGATCACTTGCATAAGCTTAATCCTAAGAATGTGTCTGCTTGGAACATGAAGAGGTTGATGAACATCGTTAGACATGGGGCCCTTTCAACTTTGGATGAACAGATAAATGATTCAACTCATGAGGACGAATCGACAACGCAGATCAAGAGTGAATATGAGGCAAAAGTTGCTGCTAAGAAGATTTTTCTGAACGTGGCTAGGCATGGTTCTAAATATATCTACCTAGAGGACTTGATGCGTTTCATGGAAAAAGATGAGGCTTCAAAAACCATGGGTCTCTTTGAAGGAGCATGTGAGAGTAGGAAAATAAGCAAATCGTCATTGAAAAATTGGGTGGTCAATGCCTTTAGAGAACGGAGGGCCCTAGCTTTGACATTAAACGATACCAAAACAGCTGTGAACAAACTTCACCGCATGGTGAATATTTTAGTTTCTGTCATTATTCTGGTTATTTGGCTATTGATTCTGGGTATAGCCACTAGCAAGTTTCTCCTATTCGTGACCTCTCAACTTGTCCTTGTCGCATTTGTATTTGGAAATACTTGCAAGACTGTTTTCGAATCAATCATCTTCCTATTTGTGATGCATCCATTTGATGTCGGAGACCGATGCGAAATTGATGGTGTGCAGATGATTGTAGAAGAAATGAACATTTTGACGACCAGTTTTCTAAGATATGACAACCAGAAGATCATATTTCCGAACAGTGTTCTCGCGACGAAGGCTATCCACAACTTCTATCGTAGTCCTGATATGGGAGATGCTGTGGAATTCTGTCTTCACATATGTACTCCGCCTGAGAAAATTGCTATTATGAGACAAAGAATAATAAGTTTCATCGAGAGCAAGAAAGAGCATTGGTGTCCTGCTCCATTGATTGTCCTCAAGGATGTAGAAGAGTTGAATAGAATGAGAATAGCAATATGGCTTACTCATAGAATGAACCATCAAGATATGGGGGAGAGGTGGACAAGGAGAGCTCTTTTGGTTGAAGAACTTGTTAAAATTTTCCAAGAGCTTGACCTGCAATACCGTCTCCTACCGCTCGATATCAATGTCCGTTGCTTGCCTCCAGTGAACTCTACTAGTCTTCCTTCAAGATAA 2793 42.96 MDFSLKSFKSHASYKYVRKLSGADATQDQEQLPILSHQHHSTMPVSDASDRKEFIVKVDQADASSNASLRAMEPVNTSGRIWRESSYDFWNDSDNRRNNGEVISGDGGGRSEDFEFRQDRKGVEDPPSKLIGQFLHKQKASGEMSLDMDMEMLELPQDKTLLPVVAESPMRRSSRELKVAFESISEISENDSMRRRHRDSLPVDEEHRVQQPQQRDRRAYGSNGEDDSAAEVLRCTSNSSFDRDVPFQRKSSLLRAKTKSRLLDPPEHQDRRSGRVPKSGQVRSGLLSKTLDEEDDDPFLEEDLPDEYKKANLGVLTLLQWASLILIIAALICTLTIRYWRRKKLWKLELWKWEVMILVLICGRLVSGWGIRIIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDEKVQREVKSNVLEYVTKVLVCLLVSTLVWLVKTLMVKILASSFHVSTYFDRIQDALFNQYVIETLSGPPLIEIQRNEEEEERLAEEVTKLQNAGATIPPDLRATAFSTTQKGVRVIGSGRLQKSPRGRSDKLSRTLSKEGDEGITIDHLHKLNPKNVSAWNMKRLMNIVRHGALSTLDEQINDSTHEDESTTQIKSEYEAKVAAKKIFLNVARHGSKYIYLEDLMRFMEKDEASKTMGLFEGACESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNILVSVIILVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTVFESIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTSFLRYDNQKIIFPNSVLATKAIHNFYRSPDMGDAVEFCLHICTPPEKIAIMRQRIISFIESKKEHWCPAPLIVLKDVEELNRMRIAIWLTHRMNHQDMGERWTRRALLVEELVKIFQELDLQYRLLPLDINVRCLPPVNSTSLPSR 930
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22720067 22723966 + CmPI595203_02g011150.1 Cmu02g1115 409164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1115 930 Gene3D - 760 809 IPR023408 -
Cmu02g1115 930 PIRSF Memb_At2g17000 37 930 IPR016688 -
Cmu02g1115 930 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 35 929 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Cmu02g1115 930 MobiDBLite consensus disorder prediction 258 282 - -
Cmu02g1115 930 SUPERFAMILY Sm-like ribonucleoproteins 750 809 IPR010920 -
Cmu02g1115 930 MobiDBLite consensus disorder prediction 535 556 - -
Cmu02g1115 930 MobiDBLite consensus disorder prediction 541 556 - -
Cmu02g1115 930 MobiDBLite consensus disorder prediction 189 229 - -
Cmu02g1115 930 FunFam Predicted mechanosensitive ion channel 760 809 - -
Cmu02g1115 930 Pfam Mechanosensitive ion channel, beta-domain 749 809 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu02g1115 930 Coils Coil 487 513 - -
Cmu02g1115 930 MobiDBLite consensus disorder prediction 189 224 - -
Cmu02g1115 930 MobiDBLite consensus disorder prediction 260 277 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1115 Cmu-Chr2:22720067 Cmu05g1606 Cmu-Chr5:25807846 4.20E-137 dispersed
Cmu03g2121 Cmu-Chr3:29643689 Cmu02g1115 Cmu-Chr2:22720067 3.60E-147 transposed
Cmu06g0831 Cmu-Chr6:10596728 Cmu02g1115 Cmu-Chr2:22720067 1.00E-143 transposed
Cmu02g0405 Cmu-Chr2:3670262 Cmu02g1115 Cmu-Chr2:22720067 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1115 K22048 - csv:101210264 1585.85