Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1120 ATGAGTGTGTTCTTGGGCTATTGTAGAAATGGAGATAAGTCCAATCTAAACAATTCTTGGATGCCTAAATTAGAAAAGTTACAAACTAGACGGCCTGGTTCTTTATCTGTGGCCGAGACTCTTGCAAAATGGAAAGATTACAATGATCACCTTGATTCATGTAATGATGAGGCAAAACTTGCTCGAAGAGTTCCAGCCAAGGGATCTAAGAAAGGCTGCATGAAAGGTAAGGGAGGGCCAGAGAATATGCGATGTAATTACAGAGGAGTTAGGCAAAGGACATGGGGGAAGTGGGTTGCAGAAATTCGGGCACCGAATAGAGGAAGTCGGCTCTGGTTAGGTACATTTCCAACTGCCATTGATGCCGCACTTGCTTATGATGAAGCTGCAAGGGCCATGTACGGCACTTTAGCTCGCCTGAATTTTCCCAATATCTCAATTCCAACCTTGCTAAAAGAAAAGGAATCACCAACTAAGGATTCTCCTGAAATCAAGAGGTCTTCAATCTCCTTTCTAGGGTCAACTTCACTGTGTCTTAGTTCCGAATCCACAATAACATCAGATCACTCAGAGGATTGTGCAGTTGAAGATGTCTAG 597 43.22 MSVFLGYCRNGDKSNLNNSWMPKLEKLQTRRPGSLSVAETLAKWKDYNDHLDSCNDEAKLARRVPAKGSKKGCMKGKGGPENMRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPTAIDAALAYDEAARAMYGTLARLNFPNISIPTLLKEKESPTKDSPEIKRSSISFLGSTSLCLSSESTITSDHSEDCAVEDV 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22849293 22850337 + CmPI595203_02g011200.1 Cmu02g1120 409169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1120 198 CDD AP2 85 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1120 198 SUPERFAMILY DNA-binding domain 86 143 IPR016177 GO:0003677(InterPro)
Cmu02g1120 198 ProSiteProfiles AP2/ERF domain profile. 86 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1120 198 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 26 178 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Cmu02g1120 198 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1120 198 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1120 198 Pfam AP2 domain 86 135 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1120 198 SMART rav1_2 86 149 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1120 198 Gene3D AP2/ERF domain 86 144 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1120 198 FunFam Ethylene-responsive transcription factor 2 85 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1120 Cmu-Chr2:22849293 Cmu04g0720 Cmu-Chr4:21584998 6.50E-40 dispersed
Cmu02g1120 Cmu-Chr2:22849293 Cmu11g0603 Cmu-Chr11:6597673 1.50E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5743 PF00847 AP2 5.40E-14 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1120 - - - 0.0