Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1136 ATGGTTCTCAATTTTAAAACTCTTCGATCTATGAAAGAGTTACAGGCCAAGCTGTCGCAGCCCGTGCACGCTTGCCGCTGGCATCATAGGTCCACCGCTGTTCCGCTAGTCTTCGCGCCTGTTGTTGCCGTTGCGAGATTGCCAGCTGCAGCGTATCCAACAGCAATGGATCAACTAATTCAACGCGACGATCTTGTTCAGAATCCGGCCACACCCTCCACCTCCATTGTACCATGCATTGAACTTCCAGGCCACCCAATTCGTTCTCAATCCAACTCCAAGTTTGATGGGGAATTCAAGGATTCTGCAGCTGCTAGAAAAGTTCAGAAGGCTGACAGAGAGAAATTAAGAAGGGGTCGTTTGAACGAACAATTTGTCGAGCTGGGAAATATTTTAGATCCCGATAGGCCCAAAAATGACAAAGCAAGGATTTTAATGGATACAATTCAATTGCTGAAGGATCTGACATCTCAAGTGAACAAATTGAAAACTGAACATGCTAATTTGATAGAAGAATCACACGAGCTAGCCCAGGAAAAGAGTGATCTGAGAGAAGAGAAGCCGTTGCTTACATCTGATATTGAGAATCTTAATGCTCAGTATCAGCAGAAACTCAGGGCTACATACCCTTGGGCTGTCATGGATCACTCGGTTGTCATGGCCCCTGCCCCCTTTCCATTTCCAGTGCCAATGCAAATGCCTCCAGGGCCATTTCCCTTGCATCCATCCTTGCAACCTTATACATTCTTTGGAAATCCGGATCCCAGGGTAATTGCAAACCCTTGTTCCACCTTCGTCCCATACATACCTCCAAATTCCTTGACCGAGCAACAGTCCCCCCAAAATGCACCACCTTTCATTCAGTCAGGCAATCGGTCTGATAACTTCAGTGAGCAAAATTCCAGGAGCAAGTTCTCAGTTGAAAGCAAGATTGAGAAAAGTGTAGATTCCAATGAAGTTGCAACTTACCTGGAGTTGAAAACTCCTGGATCTTCCTCAGATCAGGATTCATCGTTTGAATGTTCAAACGGTAAGAACAGAAAGGAAAATAATCTATCAGAAGAGAGTTCGTCAAGTAGATGTTCTTCATCTTGTAGTTTAGGGGATAATTCGTCTAGTAGCACGCCAAATGGACGAAAATCTACTGATATATGTGGAAACCCATAA 1167 44.64 MVLNFKTLRSMKELQAKLSQPVHACRWHHRSTAVPLVFAPVVAVARLPAAAYPTAMDQLIQRDDLVQNPATPSTSIVPCIELPGHPIRSQSNSKFDGEFKDSAAARKVQKADREKLRRGRLNEQFVELGNILDPDRPKNDKARILMDTIQLLKDLTSQVNKLKTEHANLIEESHELAQEKSDLREEKPLLTSDIENLNAQYQQKLRATYPWAVMDHSVVMAPAPFPFPVPMQMPPGPFPLHPSLQPYTFFGNPDPRVIANPCSTFVPYIPPNSLTEQQSPQNAPPFIQSGNRSDNFSEQNSRSKFSVESKIEKSVDSNEVATYLELKTPGSSSDQDSSFECSNGKNRKENNLSEESSSSRCSSSCSLGDNSSSSTPNGRKSTDICGNP 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23524227 23530980 + CmPI595203_02g011360.1 Cmu02g1136 409185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1136 388 MobiDBLite consensus disorder prediction 270 312 - -
Cmu02g1136 388 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 104 169 IPR036638 GO:0046983(InterPro)
Cmu02g1136 388 MobiDBLite consensus disorder prediction 326 388 - -
Cmu02g1136 388 MobiDBLite consensus disorder prediction 355 388 - -
Cmu02g1136 388 MobiDBLite consensus disorder prediction 270 304 - -
Cmu02g1136 388 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 105 155 IPR011598 GO:0046983(InterPro)
Cmu02g1136 388 Pfam Helix-loop-helix DNA-binding domain 106 155 IPR011598 GO:0046983(InterPro)
Cmu02g1136 388 PANTHER TRANSCRIPTION FACTOR BHLH121 87 382 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
Cmu02g1136 388 Gene3D - 102 195 IPR036638 GO:0046983(InterPro)
Cmu02g1136 388 SMART finulus 111 161 IPR011598 GO:0046983(InterPro)
Cmu02g1136 388 CDD bHLH_AtILR3_like 110 184 - -
Cmu02g1136 388 MobiDBLite consensus disorder prediction 326 340 - -
Cmu02g1136 388 Coils Coil 145 200 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1971 Cmu-Chr1:32996250 Cmu02g1136 Cmu-Chr2:23524227 4.40E-51 dispersed
Cmu02g1136 Cmu-Chr2:23524227 Cmu10g1383 Cmu-Chr10:6867646 7.60E-08 dispersed
Cmu02g1136 Cmu-Chr2:23524227 Cmu05g1535 Cmu-Chr5:24033478 6.20E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5745 PF00010 HLH 6.50E-07 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1136 - - - 0.0