Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1178 ATGGATCGTCCACTCCTTCTCGCCTCTGTTTTCACTCTTCTCCTTCTCCCAGATGTTCAATCGACGTCTTTTAAGTTAGTCAACAAGTGTCGGACCACGATTTGGCCTGGTTTGTTATCCGGCGCCGGCACTGCCCAGCTTCCGACCACCGGCTTCGCTCTCCGCAGCGGCAAATCCAAGATCATTCCAATCCCTAAATCTTGGTCGGGTCGGTTATGGGGTCGGACCCTATGTGGGTTAGATTCCGATGGGAAATTCTCTTGCCTCACCGGCGACTGTGGTTCGGGTAAAGTGGAGTGTATTGGCGGCGGCGCCAAGCCGCCGGCCACCTTGGCGGAGTTCACTCTCAACGGCGCCGATGGGCTTGATTTTTATGACGTCAGCTTGGTCGACGGTTACAATCTTCCGATGCTGATTGTGGCTAAAGGTGGGACGAGAGGCGGTTGCGCCGCCACGGGTTGTTTGGTGGATTTGAACGGCGCGTGTCCGTCAGAGCTGAGAGTAGCGCGTGGTGGTGGTGGTGGAAGGAGCGTGGCTTGTAGAAGCGCGTGTGAGGCTTTTAATGCTCCGCAATTTTGTTGTAGTGAGGCGTTCTCTACGCCTGACACGTGTCGACCTTCGGTATATTCGGAGTTCTTTAAACATGCTTGCCCACGCGCGTATAGCTACGCGTATGATGACAAAACCAGCACTTTCACGTGTGCCTCTGCCGATTACCTTATTATATTTTGTCCGCTACCTTACACCAGTCAGAAAGTGTTGAGTGCAAGGAAAGACGGGGCAGCGCTACCGCTCGTGAACAAGACGATGATGTATCTGAGAAGCCGAAGAGCGAGTGGCGTTCTATCTGCAGGCAGATAG 861 53.89 MDRPLLLASVFTLLLLPDVQSTSFKLVNKCRTTIWPGLLSGAGTAQLPTTGFALRSGKSKIIPIPKSWSGRLWGRTLCGLDSDGKFSCLTGDCGSGKVECIGGGAKPPATLAEFTLNGADGLDFYDVSLVDGYNLPMLIVAKGGTRGGCAATGCLVDLNGACPSELRVARGGGGGRSVACRSACEAFNAPQFCCSEAFSTPDTCRPSVYSEFFKHACPRAYSYAYDDKTSTFTCASADYLIIFCPLPYTSQKVLSARKDGAALPLVNKTMMYLRSRRASGVLSAGR 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24439827 24441783 + CmPI595203_02g011780.1 Cmu02g1178 409227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1178 286 CDD TLP-PA 23 244 - -
Cmu02g1178 286 PIRSF PR5 2 279 IPR001938 -
Cmu02g1178 286 SMART tha2 24 245 IPR001938 -
Cmu02g1178 286 ProSiteProfiles Thaumatin family profile. 21 245 IPR001938 -
Cmu02g1178 286 FunFam THAUMATIN-LIKE PROTEIN 1 22 245 - -
Cmu02g1178 286 PRINTS Pathogenesis-related protein signature 123 139 IPR001938 -
Cmu02g1178 286 PRINTS Pathogenesis-related protein signature 71 82 IPR001938 -
Cmu02g1178 286 PRINTS Pathogenesis-related protein signature 23 35 IPR001938 -
Cmu02g1178 286 PRINTS Pathogenesis-related protein signature 235 244 IPR001938 -
Cmu02g1178 286 Gene3D Thaumatin 22 245 IPR037176 -
Cmu02g1178 286 ProSitePatterns Thaumatin family signature. 84 100 IPR017949 -
Cmu02g1178 286 PANTHER OS03G0233200 PROTEIN 11 245 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Cmu02g1178 286 Pfam Thaumatin family 28 245 IPR001938 -
Cmu02g1178 286 SUPERFAMILY Osmotin, thaumatin-like protein 23 245 IPR037176 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1178 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1178 Cmu-Chr2:24439827 Cmu08g1366 Cmu-Chr8:25862574 6.90E-99 dispersed
Cmu02g1178 Cmu-Chr2:24439827 Cmu02g1179 Cmu-Chr2:24458800 8.70E-78 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g138 Blo02g00698 . Bda06g00483 . . . . . . . . Cma20g00764 . Car20g00665 . . . . . . . . . . . . . . . . . . . . Cone10ag1178 Lsi10g00478 . Chy11g00276 . . . . . . . . . Sed05g3598 . Cmo20g00761 . . . . Cpe16g00306 . Bhi10g01870 Tan05g1162 Cmetu11g0544 . . . . Cla02g01152 Cam02g1228 Cec02g1236 Cco02g1277 Clacu02g1209 Cmu02g1178 Cre02g1487 . Csa02g01372 . Cme11g00396
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000237 1 5 5 5 5 4 5 5 5 8 4 5 7 6 6 6 5 6 5 5 5 6 4 5 5 5 5 11 8 3 160