Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1195 ATGGAAGACGGGGAGCTTGAATCCTCGAACCCTGAAGTGTTTTCGAGTTCGAATGCTGTTGAGCTTCCGAGCAGTTGCTCAATGGATAGCTTCTTTGATGAAATTCTGAAGGACACTCATGCTTGCACACATGCTCATACTTGCAACCCTCCTGGTCCTGATTATTCACATACACACACCTGTTTTCATGTCCATACGAAAATTGTCTCTTCCCCCACTGAAGAAAAGGTTTCCACTGACGACACAGCGGAGTCTGTGGACAAAAAGAACAAGAAGCGGCCGCTTGGTAATCGTGAAGCAGTTCGTAAATACCGGGAGAAGAAAAAGGCGAGGGCTGCATCATTGGAAGATGAAGTTGTGAGATTGAGGGCCCTGAATCAGCAACTGTTGAAGAGATTGCAAGGTCAGGCTGCATTGGAGGCTGAGATTTCCAGGCTCAAATGTTTGCTTGTGGATATTCGGGGAAGAATTGAAGGGGAGATTGGAACGTTTCCATATCGGAAACCAGCCAATTCAGATCTGCCCAATCAAAATGTGCCGGGTAGTTACATGGTAAATCCATGTAATGTGCAATGCAATGATCAAGCATATTGCCTTCACCCAGGGGACGATGGAAAAAGTGGAGAGAGCGTTTCGTTGAATGGGCAAAGTTTTAGTGCGTGTGACTTTGAAAATCTTCAGTGCTTGGCAAATCAAAACACGGGAGTAAAGGAACTTCCTGACTGTGGACTAGGAAACACAATTTCTAACGTTAATTGCTCAGAATTAAATCCGAAGAAAGGAGGAGGGGTCTCACCAACATTGTCTTTCAGGTTTTCTCTTCCGCAACCCATTCACCCGCTTTCTAGTTGTTTGGGATGGTCATTTATGTTGAATGAGAAGAACTAG 888 45.05 MEDGELESSNPEVFSSSNAVELPSSCSMDSFFDEILKDTHACTHAHTCNPPGPDYSHTHTCFHVHTKIVSSPTEEKVSTDDTAESVDKKNKKRPLGNREAVRKYREKKKARAASLEDEVVRLRALNQQLLKRLQGQAALEAEISRLKCLLVDIRGRIEGEIGTFPYRKPANSDLPNQNVPGSYMVNPCNVQCNDQAYCLHPGDDGKSGESVSLNGQSFSACDFENLQCLANQNTGVKELPDCGLGNTISNVNCSELNPKKGGGVSPTLSFRFSLPQPIHPLSSCLGWSFMLNEKN 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24692633 24694834 + CmPI595203_02g011950.1 Cmu02g1195 409244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1195 295 Pfam Basic region leucine zipper 87 134 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1195 295 SUPERFAMILY Leucine zipper domain 89 135 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1195 295 SMART brlzneu 84 152 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1195 295 MobiDBLite consensus disorder prediction 77 97 - -
Cmu02g1195 295 Coils Coil 98 132 - -
Cmu02g1195 295 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 186 IPR031106 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0006357(PANTHER)
Cmu02g1195 295 CDD bZIP 91 144 - -
Cmu02g1195 295 FunFam Basic leucine zipper 24 75 153 - -
Cmu02g1195 295 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 134 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1195 295 Gene3D - 75 153 - -
Cmu02g1195 295 MobiDBLite consensus disorder prediction 72 97 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0433 Cmu-Chr2:3953541 Cmu02g1195 Cmu-Chr2:24692633 4.80E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5747 PF07716 bZIP_2 5.50E-15 CL0018 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1195 K25785 - csv:101219501 509.605